BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. - Nicolas Le Novère; Benjamin J. Bornstein; Alexander Broicher; Mélanie Courtot; Marco Donizelli; Harish Dharuri; Lu Li 002; Herbert M. Sauro; Maria J. Schilstra; Bruce E. Shapiro; Jacky L. Snoep; Michael Hucka (Nucleic Acids Res., 2006)

The OWL of Biomedical Investigations. - Mélanie Courtot; William J. Bug; Frank Gibson; Allyson L. Lister; James Malone; Daniel Schober; Ryan Remy Brinkman; Alan Ruttenberg (OWLED, 2008)

BioModels.net Web Services, a free and integrated toolkit for computational modelling software. - Chen Li 011; Mélanie Courtot; Nicolas Le Novère; Camille Laibe (Briefings Bioinform., 2010)

Modeling biomedical experimental processes with OBI. - Ryan Remy Brinkman; Mélanie Courtot; Dirk Derom; Jennifer Fostel; Yongqun He; Phillip W. Lord; James Malone; Helen E. Parkinson; Björn Peters; Philippe Rocca-Serra; Alan Ruttenberg; Susanna-Assunta Sansone; et al. (J. Biomed. Semant., 2010)

Towards an Adverse Event Reporting Ontology. - Mélanie Courtot; Ryan Remy Brinkman (ICBO, 2011)

Reporting Adverse Events: Basis for a Common Representation. - Mélanie Courtot; Ryan Remy Brinkman; Alan Ruttenberg (ICBO, 2011)

Building the OBO Foundry - One Policy at a Time. - Mélanie Courtot; Chris Mungall; Ryan Remy Brinkman; Alan Ruttenberg (ICBO, 2011)

MIREOT: The minimum information to reference an external ontology term. - Mélanie Courtot; Frank Gibson; Allyson L. Lister; James Malone; Daniel Schober; Ryan Remy Brinkman; Alan Ruttenberg (Appl. Ontology, 2011)

Overcoming the ontology enrichment bottleneck with Quick Term Templates. - Philippe Rocca-Serra; Alan Ruttenberg; Martin J. O'Connor; Patricia L. Whetzel; Daniel Schober; Jay Greenbaum; Mélanie Courtot; Ryan Remy Brinkman; Susanna-Assunta Sansone; Richard H. Scheuermann; Bjoern Peters (Appl. Ontology, 2011)

Knowledge representation in Health Research: the modeling of Adverse Events Following Immunization. - Mélanie Courtot (ICBO, 2012)

Adverse events following immunization: reporting standardization, automatic case classification and signal detection. - Mélanie Courtot; Ryan Remy Brinkman; Alan Ruttenberg (ICBO, 2012)

Diagnostic criteria and clinical guidelines standardization to automate case classification. - Mélanie Courtot; Jie Zheng 001; Christian J. Stoeckert Jr.; Ryan Remy Brinkman; Alan Ruttenberg (ICBO, 2013)

UniProt-GOA: A Central Resource for Data Integration and GO Annotation. - Mélanie Courtot; Aleksandra Shypitsyna; Elena Speretta; Alexander Holmes; Tony Sawford; Tony Wardell; Maria Jesus Martin; Claire O'Donovan (SWAT4LS, 2015)

Cell, Chemical and Anatomical Views of the Gene Ontology: Mapping to a Roche Controlled Vocabulary. - David Osumi-Sutherland; Enrico Ponta; Mélanie Courtot; Helen E. Parkinson; Laura Badi (SWAT4LS, 2015)

flowCL: ontology-based cell population labelling in flow cytometry. - Mélanie Courtot; Justin Meskas; Alexander D. Diehl; Radina Droumeva; Raphael Gottardo; Adrin Jalali; Mohammad Jafar Taghiyar; Holden T. Maecker; J. Philip McCoy; Alan Ruttenberg; Richard H. Scheuermann; Ryan Remy Brinkman (Bioinform., 2015)

Ten Simple Rules for Biomedical Ontology Development. - Mélanie Courtot; James Malone; Chris Mungall (ICBO/BioCreative, 2016)

Slim-o-matic: a Semi-Automated Way to Generate Gene Ontology Slims. - Mélanie Courtot; Alex L. Mitchell; Maxim Scheremetjew; Janet Piñero González; Laura I. Furlong; Robert D. Finn; Helen E. Parkinson (SWAT4LS, 2016)

From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF. - Sefa Kiliç; Dinara M. Sagitova; Shoshannah Wolfish; Benoit Bely; Mélanie Courtot; Stacy Ciufo; Tatiana A. Tatusova; Claire O'Donovan; Marcus C. Chibucos; Maria Jesus Martin; Ivan Erill (Database J. Biol. Databases Curation, 2016)

Dead simple OWL design patterns. - David Osumi-Sutherland; Mélanie Courtot; James P. Balhoff; Christopher J. Mungall (J. Biomed. Semant., 2017)

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database. - Baofeng Jia; Amogelang R. Raphenya; Brian P. Alcock; Nicholas Waglechner; Peiyao Guo; Kara K. Tsang; Briony A. Lago; Biren M. Dave; Sheldon K. Pereira; Arjun N. Sharma; Sachin Doshi; Mélanie Courtot; et al. (Nucleic Acids Res., 2017)

Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration. - Edison Ong; Zuoshuang Xiang; Bin Zhao; Yue Liu; Yu Lin; Jie Zheng 001; Chris Mungall; Mélanie Courtot; Alan Ruttenberg; Yongqun He (Nucleic Acids Res., 2017)

Using OWL reasoning to support the generation of novel gene sets for enrichment analysis. - David Osumi-Sutherland; Enrico Ponta; Mélanie Courtot; Helen E. Parkinson; Laura Badi (J. Biomed. Semant., 2018)

Where Does an Ontology Start? - Henriette Harmse; Mélanie Courtot; Warren Read; Nicolas Matentzoglu; David Osumi-Sutherland; Simon Jupp (ICBO, 2019)

BioSamples database: an updated sample metadata hub. - Mélanie Courtot; Luca Cherubin; Adam Faulconbridge; Daniel Vaughan; Matthew Green 005; David Richardson; Peter W. Harrison; Patricia L. Whetzel; Helen E. Parkinson; Tony Burdett (Nucleic Acids Res., 2019)

FAIR Principles: Interpretations and Implementation Considerations. - Annika Jacobsen; Ricardo de Miranda Azevedo; Nick S. Juty; Dominique Batista; Simon J. Coles; Ronald Cornet; Mélanie Courtot; Mercè Crosas; Michel Dumontier; Chris T. A. Evelo; Carole A. Goble; Giancarlo Guizzardi; et al. (Data Intell., 2020)

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. - Rebecca C. Jackson; Nicolas Matentzoglu; James A. Overton; Randi Vita; James P. Balhoff; Pier Luigi Buttigieg; Seth Carbon; Mélanie Courtot; Alexander D. Diehl; Damion M. Dooley; William D. Duncan; Nomi L. Harris; et al. (Database J. Biol. Databases Curation, 2021)

The European Nucleotide Archive in 2020. - Peter W. Harrison; Alisha Ahamed; Raheela Aslam; Blaise T. F. Alako; Josephine Burgin; Nicola Buso; Mélanie Courtot; Jun Fan; Dipayan Gupta; Muhammad Haseeb; Sam Holt; Talal Ibrahim; et al. (Nucleic Acids Res., 2021)

ELIXIR biovalidator for semantic validation of life science metadata. - Isuru Udara Liyanage; Tony Burdett; Bert Droesbeke; Karoly Erdos; Rolando Fernandez; Alasdair J. G. Gray; Muhammad Haseeb; Simon Jupp; Flavia Penim; Cyril Pommier; Philippe Rocca-Serra; Mélanie Courtot; et al. (Bioinform., 2022)

BioSamples database: FAIRer samples metadata to accelerate research data management. - Mélanie Courtot; Dipayan Gupta; Isuru Udara Liyanage; Fuqi Xu; Tony Burdett (Nucleic Acids Res., 2022)

Features of a FAIR vocabulary. - Fuqi Xu; Nick S. Juty; Carole A. Goble; Simon Jupp; Helen E. Parkinson; Mélanie Courtot (J. Biomed. Semant., 2023)