Benchmarking of viral haplotype reconstruction programmes: an overview of the capacities and limitations of currently available programmes. - Melanie Schirmer; William T. Sloan; Christopher Quince (Briefings Bioinform., 2014)

Algorithms for viral haplotype reconstruction and bacterial metagenomics : resolving fine-scale variation in next generation sequencing data. - Melanie Schirmer (2014)

Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data. - Melanie Schirmer; Rosalinda D'Amore; Umer Zeeshan Ijaz; Neil Hall; Christopher Quince (BMC Bioinform., 2016)