Balancing FPGA Resource Utilities. - Xuejun Liang; Jeffrey S. Vetter; Melissa C. Smith; Arthur S. Bland (ERSA, 2005)

Accelerating Scientific Applications with the SRC-6 Reconfigurable Computer: Methodologies and Analysis. - Melissa C. Smith; Jeffrey S. Vetter; Xuejun Liang (IPDPS, 2005)

Parallel application performance on shared high performance reconfigurable computing resources. - Melissa C. Smith; Gregory D. Peterson (Perform. Evaluation, 2005)

Simulative analysis of dynamic scheduling heuristics for reconfigurable computing of parallel applications. - Rajagopal Subramaniyan; Ian A. Troxel; Alan D. George; Melissa C. Smith (FPGA, 2006)

An Application Specific Memory Characterization Technique for Co-processor Accelerators. - Sadaf R. Alam; Jeffrey S. Vetter; Melissa C. Smith (ASAP, 2007)

Using FPGA Devices to Accelerate Biomolecular Simulations. - Sadaf R. Alam; Pratul K. Agarwal; Melissa C. Smith; Jeffrey S. Vetter; David Caliga (Computer, 2007)

Throughput Improvement of Molecular Dynamics Simulations Using Reconfigurable Computing. - Sadaf R. Alam; Pratul K. Agarwal; Jeffrey S. Vetter; Melissa C. Smith (Scalable Comput. Pract. Exp., 2007)

FPGA Implementation of Izhikevich Spiking Neural Networks for Character Recognition. - Kenneth L. Rice; Mohammad Ashraf Bhuiyan; Tarek M. Taha; Christopher N. Vutsinas; Melissa C. Smith (ReConFig, 2009)

Energy efficient biomolecular simulations with FPGA-based reconfigurable computing. - Ananth Nallamuthu; Melissa C. Smith; Scott S. Hampton; Pratul K. Agarwal; Sadaf R. Alam (Conf. Computing Frontiers, 2010)

Acceleration of spiking neural networks in emerging multi-core and GPU architectures. - Mohammad Ashraf Bhuiyan; Vivek K. Pallipuram; Melissa C. Smith (IPDPS Workshops, 2010)

Optimization and performance study of large-scale biological networks for reconfigurable computing. - Mohammad Ashraf Bhuiyan; Ananth Nallamuthu; Melissa C. Smith; Vivek K. Pallipuram (HPRCTA@SC, 2010)

Performance, optimization, and fitness: Connecting applications to architectures. - Mohammad Ashraf Bhuiyan; Melissa C. Smith; Vivek K. Pallipuram (Concurr. Comput. Pract. Exp., 2011)

An End-to-End Tool Flow for FPGA-Accelerated Scientific Computing. - Greg Stitt; Alan D. George; Herman Lam; Melissa C. Smith; Vikas Aggarwal; Gongyu Wang; Casey Reardon; Brian Holland; Seth Koehler; James Coole (IEEE Des. Test Comput., 2011)

An analytical model for multilevel performance prediction of Multi-FPGA systems. - Brian Holland; Alan D. George; Herman Lam; Melissa C. Smith (ACM Trans. Reconfigurable Technol. Syst., 2011)

Optimization of Shared High-Performance Reconfigurable Computing Resources. - Melissa C. Smith; Gregory D. Peterson (ACM Trans. Embed. Comput. Syst., 2012)

A comparative study of GPU programming models and architectures using neural networks. - Vivek K. Pallipuram; Mohammad Ashraf Bhuiyan; Melissa C. Smith (J. Supercomput., 2012)

Circumventing keyloggers and screendumps. - Karan Sapra; Benafsh Husain; Richard R. Brooks; Melissa C. Smith (MALWARE, 2013)

Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study. - F. Alex Feltus; Stephen P. Ficklin; Scott M. Gibson; Melissa C. Smith (BMC Syst. Biol., 2013)

A practical network intrusion detection system for inline FPGAs on 10GbE network adapters. - Keerthan Jaic; Melissa C. Smith; Nilim Sarma (ASAP, 2014)

Combining Hadoop and GPU to preprocess large Affymetrix microarray data. - Sufeng Niu; Guangyu Yang; Nilim Sarma; Pengfei Xuan; Melissa C. Smith; Pradip K. Srimani; Feng Luo 001 (IEEE BigData, 2014)

A regression-based performance prediction framework for synchronous iterative algorithms on general purpose graphical processing unit clusters. - Vivek K. Pallipuram; Melissa C. Smith; Nimisha Raut; Xiaoyu Ren (Concurr. Comput. Pract. Exp., 2014)

Guest Editorial: Application Specific Processors and Architectures. - Melissa C. Smith; Kubilay Atasu (J. Signal Process. Syst., 2014)

Enhancing Hardware Design Flows with MyHDL. - Keerthan Jaic; Melissa C. Smith (FPGA, 2015)

Subjective versus objective: classifying analytical models for productive heterogeneous performance prediction. - Vivek K. Pallipuram; Melissa C. Smith; Nilim Sarma; Ranajeet Anand; Edwin Weill; Karan Sapra (J. Supercomput., 2015)

HPC enabled real-time remote processing of laparoscopic surgery. - Zahra Ronaghi; Karan Sapra; Ryan Izard; Edward B. Duffy; Melissa C. Smith; Kuang-Ching Wang; David M. Kwartowitz (Image-Guided Procedures, 2016)

Generalized Value Iteration Networks: Life Beyond Lattices. - Sufeng Niu; Siheng Chen; Hanyu Guo; Colin Targonski; Melissa C. Smith; Jelena Kovacevic (AAAI, 2018)

Artificial Intelligence and Deep Learning Applications for Automotive Manufacturing. - André Luckow; Ken Kennedy; Marcin Ziolkowski; Emil Djerekarov; Matthew Cook 004; Edward B. Duffy; Michael Schleiss; Bennie Vorster; Edwin Weill; Ankit Kulshrestha; Melissa C. Smith (IEEE BigData, 2018)

Speech Enhancement Using Forked Generative Adversarial Networks with Spectral Subtraction. - Ju Lin; Sufeng Niu; Zice Wei; Xiang Lan; Adriaan J. de Lind van Wijngaarden; Melissa C. Smith; Kuang-Ching Wang (INTERSPEECH, 2019)

GPU Implementation of Pairwise Gaussian Mixture Models for Multi-Modal Gene Co-Expression Networks. - Benjamin T. Shealy; Josh J. R. Burns; Melissa C. Smith; F. Alex Feltus; Stephen P. Ficklin (IEEE Access, 2019)

Cellular State Transformations using Generative Adversarial Networks. - Colin Targonski; Benjamin T. Shealy; Melissa C. Smith; F. Alex Feltus (CoRR, 2019)

Improved Speech Enhancement Using a Time-Domain GAN with Mask Learning. - Ju Lin; Sufeng Niu; Adriaan J. de Lind van Wijngaarden; Jerome L. McClendon; Melissa C. Smith; Kuang-Ching Wang (INTERSPEECH, 2020)

Cellular State Transformations Using Deep Learning for Precision Medicine Applications. - Colin Targonski; M. Reed Bender; Benjamin T. Shealy; Benafsh Husain; Bill Paseman; Melissa C. Smith; F. Alex Feltus (Patterns, 2020)

TIGRA: A Tightly Integrated Generic RISC-V Accelerator Interface. - Brad Green; Dillon Todd; Jon C. Calhoun; Melissa C. Smith (CLUSTER, 2021)

Speaker-Aware Speech Enhancement with Self-Attention. - Ju Lin; Adriaan J. de Lind van Wijngaarden; Melissa C. Smith; Kuang-Ching Wang (EUSIPCO, 2021)

Systematic Evaluation and Enhancement of Speech Recognition in Operational Medical Environments. - Snigdhaswin Kar; Prabodh Mishra; Ju Lin; Minjae Woo; Nicholas Deas; Caleb Linduff; Sufeng Niu; Yuzhe Yang; Jerome McClendon; D. Hudson Smith; Melissa C. Smith; Ronald W. Gimbel; et al. (IJCNN, 2021)

Intelligent Resource Provisioning for Scientific Workflows and HPC. - Benjamin T. Shealy; F. Alex Feltus; Melissa C. Smith (WORKS, 2021)

GPU Acceleration of the HemeLB Code for Lattice Boltzmann Simulations in Sparse Complex Geometries. - Benjamin T. Shealy; Mehrdad Yousefi; Ashwin Trikuta Srinath; Melissa C. Smith; Ulf D. Schiller (IEEE Access, 2021)

Towards Aggregated Asynchronous Checkpointing. - Mikaila J. Gossman; Bogdan Nicolae; Jon C. Calhoun; Franck Cappello; Melissa C. Smith (CoRR, 2021)

Speech Enhancement Using Multi-Stage Self-Attentive Temporal Convolutional Networks. - Ju Lin; Adriaan J. de Lind van Wijngaarden; Kuang-Ching Wang; Melissa C. Smith (IEEE ACM Trans. Audio Speech Lang. Process., 2021)

A Parallel Jacobi-Embedded Gauss-Seidel Method. - Afshin Ahmadi; Felice Manganiello; Amin Khademi; Melissa C. Smith (IEEE Trans. Parallel Distributed Syst., 2021)

Lossy Compression to Reduce Latency of Local Image Transfer for Autonomous Off-Road Perception Systems. - Max H. Faykus; Bradley Selee; Jon C. Calhoun; Melissa C. Smith (IEEE Big Data, 2022)

Addressing noise in co-expression network construction. - Josh J. R. Burns; Benjamin T. Shealy; Mitchell S. Greer; John A. Hadish; Matthew McGowan; Tyler Biggs; Melissa C. Smith; F. Alex Feltus; Stephen P. Ficklin (Briefings Bioinform., 2022)

GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure. - John A. Hadish; Tyler Biggs; Benjamin T. Shealy; M. Reed Bender; Coleman McKnight; Connor Wytko; Melissa C. Smith; F. Alex Feltus; Loren A. Honaas; Stephen P. Ficklin (BMC Bioinform., 2022)

Lossy and Lossless Compression for BioFilm Optical Coherence Tomography (OCT). - Max Henry Faykus; Jon Calhoun 001; Melissa C. Smith (SC Workshops, 2023)

Accelerated dynamic data reduction using spatial and temporal properties. - Megan Hickman Fulp; Dakota Fulp; Changfeng Zou; Cooper Sanders; Ayan Biswas; Melissa C. Smith; Jon C. Calhoun (Int. J. High Perform. Comput. Appl., 2023)

GEMDiff: a diffusion workflow bridges between normal and tumor gene expression states: a breast cancer case study. - Xusheng Ai; Melissa C. Smith; F. Alex Feltus (Briefings Bioinform., 2025)