lobSTR: A Short Tandem Repeat Profiler for Personal Genomes. - Melissa Gymrek; David Golan; Saharon Rosset; Yaniv Erlich (RECOMB, 2012)

PyBamView: a browser-based application for viewing short read alignments. - Melissa Gymrek (Bioinform., 2014)

LoQAtE - Localization and Quantitation ATlas of the yeast proteomE. A new tool for multiparametric dissection of single-protein behavior in response to biological perturbations in yeast. - Michal Breker; Melissa Gymrek; Ofer Moldavski; Maya Schuldiner (Nucleic Acids Res., 2014)

Targeted Genotyping of Variable Number Tandem Repeats with AdVNTR. - Mehrdad Bakhtiari; Sharona Shleizer-Burko; Melissa Gymrek; Vikas Bansal 001; Vineet Bafna (RECOMB, 2018)

Journal of Open Source Software (JOSS): design and first-year review. - Arfon M. Smith; Kyle E. Niemeyer; Daniel S. Katz; Lorena A. Barba; George Githinji; Melissa Gymrek; Kathryn D. Huff; Christopher R. Madan; Abigail Cabunoc Mayes; Kevin M. Moerman; Pjotr Prins; Karthik Ram; et al. (PeerJ Comput. Sci., 2018)

TRTools: a toolkit for genome-wide analysis of tandem repeats. - Nima Mousavi; Jonathan Margoliash; Neha Pusarla; Shubham Saini; Richard Yanicky; Melissa Gymrek (Bioinform., 2021)

A flexible ChIP-sequencing simulation toolkit. - An Zheng; Michael Lamkin; Yutong Qiu; Kevin Ren; Alon Goren; Melissa Gymrek (BMC Bioinform., 2021)

Deep neural networks identify sequence context features predictive of transcription factor binding. - An Zheng; Michael Lamkin; Hanqing Zhao; Cynthia Wu; Hao Su; Melissa Gymrek (Nat. Mach. Intell., 2021)

Haptools: a toolkit for admixture and haplotype analysis. - Arya R. Massarat; Michael Lamkin; Ciara Reeve; Amy L. Williams; Matteo D'Antonio; Melissa Gymrek (Bioinform., 2023)