MemO: A Consensus Approach to the Annotation of a Protein's Membrane Organization. - Melissa J. Davis; Fasheng Zhang; Zheng Yuan; Rohan D. Teasdale (Silico Biol., 2006)

LOCATE: a mouse protein subcellular localization database. - J. Lynn Fink; Rajith N. Aturaliya; Melissa J. Davis; Fasheng Zhang; Kelly Hanson; Melvena S. Teasdale; Chikatoshi Kai; Jun Kawai; Piero Carninci; Yoshihide Hayashizaki; Rohan D. Teasdale (Nucleic Acids Res., 2006)

Integrating Hierarchical Controlled Vocabularies With OWL Ontology: A Case Study from the Domain of Molecular Interactions. - Melissa J. Davis; Andrew F. Newman; Imran Khan; Jane Hunter 001; Mark A. Ragan (APBC, 2008)

Protein-protein interaction as a predictor of subcellular location. - Chang Shin; Simon Wong; Melissa J. Davis; Mark A. Ragan (BMC Syst. Biol., 2009)

Automatic, context-specific generation of Gene Ontology slims. - Melissa J. Davis; Muhammad Shoaib B. Sehgal; Mark A. Ragan (BMC Bioinform., 2010)

A Semantic Web Ontology for Small Molecules and Their Biological Targets. - Joo-Young Choi; Melissa J. Davis; Andrew F. Newman; Mark A. Ragan (J. Chem. Inf. Model., 2010)

Visualising associations between paired 'omics' data sets. - Ignacio González; Kim-Anh Lê Cao; Melissa J. Davis; Sébastien Déjean (BioData Min., 2012)

Gene Ontology-driven inference of protein-protein interactions using inducers. - Stefan Maetschke; Martin Simonsen; Melissa J. Davis; Mark A. Ragan (Bioinform., 2012)

Mapping the stabilome: a novel computational method for classifying metabolic protein stability. - Ralph Patrick; Kim-Anh Lê Cao; Melissa J. Davis; Bostjan Kobe; Mikael Bodén (BMC Syst. Biol., 2012)

mCOPA: analysis of heterogeneous features in cancer expression data. - Chenwei Wang; Alperen Taciroglu; Stefan Maetschke; Colleen C. Nelson; Mark A. Ragan; Melissa J. Davis (J. Clin. Bioinform., 2012)

RMaNI: Regulatory Module Network Inference framework. - Piyush B. Madhamshettiwar; Stefan Maetschke; Melissa J. Davis; Mark A. Ragan (BMC Bioinform., 2013)

Extracting reaction networks from databases-opening Pandora's box. - Liam G. Fearnley; Melissa J. Davis; Mark A. Ragan; Lars Keld Nielsen (Briefings Bioinform., 2014)

Supervised, semi-supervised and unsupervised inference of gene regulatory networks. - Stefan Maetschke; Piyush B. Madhamshettiwar; Melissa J. Davis; Mark A. Ragan (Briefings Bioinform., 2014)

RaftProt: mammalian lipid raft proteome database. - Anup Shah; David Chen 002; Akash R. Boda; Leonard J. Foster; Melissa J. Davis; Michelle M. Hill (Nucleic Acids Res., 2015)

Single sample scoring of molecular phenotypes. - Momeneh Foroutan; Dharmesh D. Bhuva; Ruqian Lyu; Kristy Horan; Joseph Cursons; Melissa J. Davis (BMC Bioinform., 2018)

SingscoreAMLMutations: An R/Bioconductor workflow package. - Dharmesh D. Bhuva; Joseph Cursons; Yi Xie; Momeneh Foroutan; Melissa J. Davis (Zenodo, 2019)

Assigning function to protein-protein interactions: a weakly supervised BioBERT based approach using PubMed abstracts. - Aparna Elangovan; Melissa J. Davis; Karin Verspoor (CoRR, 2020)

Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT. - Aparna Elangovan; Yuan Li 012; Douglas E. V. Pires; Melissa J. Davis; Karin Verspoor (BMC Bioinform., 2022)

Sequence Representations and Their Utility for Predicting Protein-Protein Interactions. - Dhananjay Kimothi; Pravesh Biyani; James M. Hogan; Melissa J. Davis (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

vissE.cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis. - Ahmed Mohamed 002; Dharmesh D. Bhuva; Sam Lee; Ning Liu; Chin Wee Tan; Melissa J. Davis (Nucleic Acids Res., 2023)

vissE: a versatile tool to identify and visualise higher-order molecular phenotypes from functional enrichment analysis. - Dharmesh D. Bhuva; Chin Wee Tan; Ning Liu; Holly J. Whitfield; Nicholas Papachristos; Samuel C. Lee; Malvika Kharbanda; Ahmed Mohamed 002; Melissa J. Davis (BMC Bioinform., 2024)