Detecting coevolving amino acid sites using Bayesian mutational mapping. - Matthew W. Dimmic; Melissa J. Hubisz; Carlos D. Bustamante; Rasmus Nielsen (ISMB (Supplement of Bioinformatics), 2005)

PHAST and RPHAST: phylogenetic analysis with space/time models. - Melissa J. Hubisz; Katherine S. Pollard; Adam C. Siepel (Briefings Bioinform., 2011)

SweepFinder2: increased sensitivity, robustness and flexibility. - Michael Degiorgio; Christian D. Huber; Melissa J. Hubisz; Ines Hellmann; Rasmus Nielsen (Bioinform., 2016)