SVM-BALSA: Remote homology detection based on Bayesian sequence alignment. - Bobbie-Jo M. Webb-Robertson; Christopher S. Oehmen; Melissa M. Matzke (Comput. Biol. Chem., 2005)

Dimension Reduction via Unsupervised Learning Yields Significant Computational Improvements for Support Vector Machine Based Protein Family Classification. - Bobbie-Jo M. Webb-Robertson; Melissa M. Matzke; Christopher S. Oehmen (ICMLA, 2008)

Improved quality control processing of peptide-centric LC-MS proteomics data. - Melissa M. Matzke; Katrina M. Waters; Thomas O. Metz; Jon M. Jacobs; Amy C. Sims; Ralph S. Baric; Joel G. Pounds; Bobbie-Jo M. Webb-Robertson (Bioinform., 2011)