A comparative method for identification of gene structures and alternatively spliced variants. - Trees-Juen Chuang; Feng-Chi Chen; Meng-Yuan Chou (Bioinform., 2004)

SinicView: An Interactive Visualization Tool for Comparison of Multiple Sequence Alignment Results. - Arthur Chun-Chieh Shih; D. T. Lee; Laurent Lin; Chin-Lin Peng; Shiang-Heng Chen; Chun-Yi Wong; Meng-Yuan Chou; Tze-Chang Shiao (CSB Workshops, 2005)

Method for identifying transcription factor binding sites in yeast. - Huai-Kuang Tsai; Grace Tzu-Wei Huang; Meng-Yuan Chou; Henry Horng-Shing Lu; Wen-Hsiung Li (Bioinform., 2006)

SinicView: A visualization environment for comparisons of multiple nucleotide sequence alignment tools. - Arthur Chun-Chieh Shih; D. T. Lee; Laurent Lin; Chin-Lin Peng; Shiang-Heng Chen; Yu-Wei Wu; Chun-Yi Wong; Meng-Yuan Chou; Tze-Chang Shiao; Mu-Fen Hsieh (BMC Bioinform., 2006)

MYBS: a comprehensive web server for mining transcription factor binding sites in yeast. - Huai-Kuang Tsai; Meng-Yuan Chou; Ching Hua Shih; Grace Tzu-Wei Huang; Tien-Hsien Chang; Wen-Hsiung Li (Nucleic Acids Res., 2007)