Information system attribute reduction. - Shaobai Chen; Mengfei Cao; Xiaodan Chen (IWACI, 2010)

Remote homology detection on alpha-structural proteins using simulated evolution. - Mengfei Cao; Lenore J. Cowen (BCB, 2012)

New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence. - Mengfei Cao; Christopher M. Pietras; Xian Feng; Kathryn J. Doroschak; Thomas Schaffner; Jisoo Park; Hao Zhang; Lenore J. Cowen; Benjamin J. Hescott (Bioinform., 2014)

When should we NOT transfer functional annotation between sequence paralogs? - Mengfei Cao; Lenore J. Cowen (PSB, 2017)

Probabilistic Hierarchical Forecasting with Deep Poisson Mixtures. - Kin G. Olivares; O. Nganba Meetei; Ruijun Ma; Rohan Reddy; Mengfei Cao (CoRR, 2021)

Probabilistic Forecasting with Coherent Aggregation. - Geoffrey Négiar; Ruijun Ma; O. Nganba Meetei; Mengfei Cao; Michael W. Mahoney (CoRR, 2023)

♣ CLOVER ♣: Probabilistic Forecasting with Coherent Learning Objective Reparameterization. - Kin G. Olivares; Geoffrey Négiar; Ruijun Ma; Oinam Nganba Meetei; Mengfei Cao; Michael W. Mahoney (Trans. Mach. Learn. Res., 2024)

SPADE-S: A Sparsity-Robust Foundational Forecaster. - Malcolm Wolff; Matthew Li; Ravi Kiran Selvam; Hanjing Zhu; Kin G. Olivares; Ruijun Ma; Abhinav Katoch; Shankar Ramasubramanian; Mengfei Cao; Roberto Bandarra; Rahul Gopalsamy; Stefania La Vattiata; et al. (CoRR, 2025)