Evaluation of large language models for discovery of gene set function. - Mengzhou Hu; Sahar Alkhairy; Ingoo Lee; Rudolf T. Pillich; Robin Bachelder; Trey Ideker; Dexter Pratt (CoRR, 2023)

Thought Graph: Generating Thought Process for Biological Reasoning. - Chi-Yang Hsu; Kyle Cox; Jiawei Xu 006; Zhen Tan 001; Tianhua Zhai; Mengzhou Hu; Dexter Pratt; Tianlong Chen 001; Ziniu Hu; Ying Ding 001 (WWW (Companion Volume), 2024)

Thought Graph: Balancing Specificity and Uncertainty in LLM-Based Gene Set Annotation. - Kyle Cox; Gang Qu; Chi-Yang Hsu; Jiawei Xu 006; Yingtong Zhou; Zhen Tan 001; Mengzhou Hu; Tianlong Chen 001; Ziniu Hu; Zhongming Zhao; Ying Ding 001 (ICHI, 2025)