Double-Pushout Hypergraph Rewriting Using Total Conformisms. - Mercè Llabrés; Francesc Rosselló (Fundam. Informaticae, 1997)

Double-Pullback Graph Transitions: A Rule-Based Framework with Incomplete Information. - Hartmut Ehrig; Reiko Heckel; Mercè Llabrés; Fernando Orejas; Julia Padberg; Grzegorz Rozenberg (TAGT, 1998)

Pushout Complements for Arbitrary Partial Algebras. - Mercè Llabrés; Francesc Rosselló (TAGT, 1998)

A Bi-Categorical Axiomatisation of Concurrent Graph Rewriting. - Fabio Gadducci; Reiko Heckel; Mercè Llabrés (CTCS, 1999)

Towards a Double Pushout Transformation of Algebras. - Mercè Llabrés; Francesc Rosselló (GETGRATS Closing Workshop, 2001)

Pushout Complements for Partly Total Algebras. - Peter Burmeister; Mercè Llabrés; Francesc Rosselló (Math. Struct. Comput. Sci., 2002)

Concurrency and Loose Semantics of Open Graph Transformation Systems. - Reiko Heckel; Mercè Llabrés; Hartmut Ehrig; Fernando Orejas (Math. Struct. Comput. Sci., 2002)

Modelling Biochemical Operations on RNA Secondary Structures - Mercè Llabrés; Francesc Rosselló (CoRR, 2003)

A family of metrics on contact structures based on edge ideals - Mercè Llabrés; Francesc Rosselló (CoRR, 2003)

On Supertrees of Phylogenetic Trees. - Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (Spanish Bioinformatics Conference, 2004)

Ordering BAC Clones from Fingerprint Data obtained through Four Enzymes Digestion and Fluorescent Labeling. - Giulio Marcon; Nicola Cannata; Mercè Llabrés; Marta Simeoni; Giorgio Valle (Spanish Bioinformatics Conference, 2004)

A new family of metrics for biopolymer contact structures. - Mercè Llabrés; Francesc Rosselló (Comput. Biol. Chem., 2004)

Single-Pushout Transformation Of Total Algebras. - Ricardo Alberich; Mercè Llabrés; Francesc Rosselló (Int. J. Found. Comput. Sci., 2004)

A family of metrics for biopolymers based on counting independent sets. - Jairo Rocha; Mercè Llabrés; Ricardo Alberich (Comput. Biol. Chem., 2005)

On the Ancestral Compatibility of Two Phylogenetic Trees with Nested Taxa - Mercè Llabrés; Jairo Rocha; Francesc Rosselló; Gabriel Valiente (CoRR, 2005)

The uniqueness condition for the double pushout transformation of algebras. - Mercè Llabrés; Francesc Rosselló (Inf. Sci., 2005)

A distance metric for a class of tree-sibling phylogenetic networks. - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (Bioinform., 2008)

Nodal distances for rooted phylogenetic trees. - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (CoRR, 2008)

A Distance Metric for Tree-Sibling Time Consistent Phylogenetic Networks - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (CoRR, 2008)

The comparison of tree-sibling time consistent phylogenetic networks is graph isomorphism-complete - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (CoRR, 2009)

Metrics for Phylogenetic Networks I: Generalizations of the Robinson-Foulds Metric. - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Metrics for Phylogenetic Networks II: Nodal and Triplets Metrics. - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

On Nakhleh's Metric for Reduced Phylogenetic Networks. - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Two Results on Distances for Phylogenetic Networks. - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló (IWPACBB, 2010)

Path lengths in tree-child time consistent hybridization networks. - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (Inf. Sci., 2010)

Comparison of Galled Trees. - Gabriel Cardona; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

MP-Align: alignment of metabolic pathways. - Ricardo Alberich; Mercè Llabrés; David Sánchez; Marta Simeoni; Marc Tuduri (BMC Syst. Biol., 2014)

Tree-Child Cluster Networks. - Adrià Alcalà; Mercè Llabrés; Francesc Rosselló; Pau Rullan (Fundam. Informaticae, 2014)

IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes. - David Páez-Espino; Simon Roux; I-Min A. Chen; Krishna Palaniappan; Anna Ratner; Ken Chu; Marcel Huntemann; T. B. K. Reddy; Joan Carles Pons; Mercè Llabrés; Emiley A. Eloe-Fadrosh; Natalia N. Ivanova; et al. (Nucleic Acids Res., 2019)

A Generalized Robinson-Foulds Distance for Clonal Trees, Mutation Trees, and Phylogenetic Trees and Networks. - Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (BCB, 2020)

An update on the Symbiotic Genomes Database (SymGenDB): a collection of metadata, genomic, genetic and protein sequences, orthologs and metabolic networks of symbiotic organisms. - Mariana Reyes-Prieto; Carlos Vargas-Chávez; Mercè Llabrés; Pere Palmer; Amparo Latorre; Andrés Moya (Database J. Biol. Databases Curation, 2020)

AligNet: alignment of protein-protein interaction networks. - Adrià Alcalà; Ricardo Alberich; Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (BMC Bioinform., 2020)

Alignment of biological networks by integer linear programming: virus-host protein-protein interaction networks. - Mercè Llabrés; Gabriel Riera; Francesc Rosselló; Gabriel Valiente (BMC Bioinform., 2020)

VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families. - Joan Carles Pons; David Páez-Espino; Gabriel Riera; Natalia Ivanova; Nikos Kyrpides; Mercè Llabrés (Bioinform., 2021)

The Generalized Robinson-Foulds Distance for Phylogenetic Trees. - Mercè Llabrés; Francesc Rosselló; Gabriel Valiente (J. Comput. Biol., 2021)

Analysing the Expressiveness of Metabolic Networks Representations. - Irene García; Bessem Chouaia; Mercè Llabrés; Pere Palmer-Rodríguez; Marta Simeoni (WIVACE, 2023)

Metadag: a web tool to generate and analyse metabolic networks. - Pere Palmer-Rodríguez; Ricardo Alberich; Mariana Reyes-Prieto; José A. Castro; Mercè Llabrés (BMC Bioinform., 2025)