Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops. - Hélène Chiapello; I. Bourgait; F. Sourivong; G. Heuclin; Annie Gendrault-Jacquemard; Marie-Agnès Petit; Meriem El Karoui (BMC Bioinform., 2005)

MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level. - Hélène Chiapello; Annie Gendrault; Christophe Caron; Jérome Blum; Marie-Agnès Petit; Meriem El Karoui (BMC Bioinform., 2008)

Assessing the Robustness of Complete Bacterial Genome Segmentations. - Hugo Devillers; Hélène Chiapello; Sophie Schbath; Meriem El Karoui (RECOMB-CG, 2010)

Robustness Assessment of Whole Bacterial Genome Segmentations. - Hugo Devillers; Hélène Chiapello; Sophie Schbath; Meriem El Karoui (J. Comput. Biol., 2011)

Estimating mutation rates under heterogeneous stress responses. - Lucy Lansch-Justen; Meriem El Karoui; Helen K. Alexander (PLoS Comput. Biol., 2024)