Automatic segmentation of internal structures of the brain in MR images using a tandem of affine and non-rigid registration of an anatomical brain atlas. - Meritxell Bach Cuadra; Olivier Cuisenaire; Reto Meuli; Jean-Philippe Thiran (ICIP (3), 2001)

Atlas-Based Segmentation of Pathological Brains Using a Model of Tumor Growth. - Meritxell Bach Cuadra; J. Gomez; Patric Hagmann; Claudio Pollo; Jean-Guy Villemure; Benoit M. Dawant; Jean-Philippe Thiran (MICCAI (1), 2002)

Validation of Tissue Modelization and Classification Techniques in T1-Weighted MR Brain Images. - Meritxell Bach Cuadra; Bram Platel; Eduardo Solanas; Torsten Butz; Jean-Philippe Thiran (MICCAI (1), 2002)

Atlas-based segmentation of pathological brain MR images. - Meritxell Bach Cuadra; Claudio Pollo; Anton Bardera; Olivier Cuisenaire; Jean-Guy Villemure; Jean-Philippe Thiran (ICIP (1), 2003)

Atlas-based segmentation of pathological MR brain images using a model of lesion growth. - Meritxell Bach Cuadra; Claudio Pollo; Anton Bardera; Olivier Cuisenaire; Jean-Guy Villemure; Jean-Philippe Thiran (IEEE Trans. Medical Imaging, 2004)

Region-based satellite image classification: method and validation. - Xavier Gigandet; Meritxell Bach Cuadra; Abram Pointet; Leila Cammoun; Régis Caloz; Jean-Philippe Thiran (ICIP (3), 2005)

Cross Validation of Experts Versus Registration Methods for Target Localization in Deep Brain Stimulation. - F. Javier Sánchez Castro; Claudio Pollo; Reto Meuli; Philippe Maeder; Meritxell Bach Cuadra; Olivier Cuisenaire; Jean-Guy Villemure; Jean-Philippe Thiran (MICCAI, 2005)

Segmentation of brain structures in presence of a space-occupying lesion. - Claudio Pollo; Meritxell Bach Cuadra; Olivier Cuisenaire; Jean-Guy Villemure; Jean-Philippe Thiran (NeuroImage, 2005)

Comparison and validation of tissue modelization and statistical classification methods in T1-weighted MR brain images. - Meritxell Bach Cuadra; Leila Cammoun; Torsten Butz; Olivier Cuisenaire; Jean-Philippe Thiran (IEEE Trans. Medical Imaging, 2005)

Dense deformation field estimation for atlas registration using the active contour framework. - Valerie Duay; Meritxell Bach Cuadra; Xavier Bresson; Jean-Philippe Thiran (EUSIPCO, 2006)

Dense deformation field estimation for atlas-based segmentation of pathological MR brain images. - Meritxell Bach Cuadra; Mathieu De Craene; Valerie Duay; Benoît Macq; Claudio Pollo; Jean-Philippe Thiran (Comput. Methods Programs Biomed., 2006)

A Cross Validation Study of Deep Brain Stimulation Targeting: From Experts to Atlas-Based, Segmentation-Based and Automatic Registration Algorithms. - F. Javier Sánchez Castro; Claudio Pollo; Reto Meuli; Philippe Maeder; Olivier Cuisenaire; Meritxell Bach Cuadra; Jean-Guy Villemure; Jean-Philippe Thiran (IEEE Trans. Medical Imaging, 2006)

Multimodal Evaluation for Medical Image Segmentation. - Rubén Cárdenes; Meritxell Bach; Ying Chi; Ioannis Marras; Rodrigo de Luis García; Mats Anderson; Peter Cashman; Matthieu Bultelle (CAIP, 2007)

Registration of multiple regions derived from the optical flow model and the active contour framework. - Valerie Duay; Xavier Bresson; Nawal Houhou; Meritxell Bach Cuadra; Jean-Philippe Thiran (EUSIPCO, 2007)

Brain surface segmentation of Magnetic Resonance images of the fetus. - D. Ferrario; Meritxell Bach Cuadra; Marie Schaer; Nawal Houhou; Dominique Zosso; Stephan Eliez; Laurent Guibaud; Jean-Philippe Thiran (EUSIPCO, 2008)

Fast bias field correction for 9.4 tesla magnetic resonance imaging. - X. Pena Pina; Meritxell Bach Cuadra; Nicolas Kunz; Nathalie Just; Rolf Gruetter; Jean-Philippe Thiran (EUSIPCO, 2008)

An Active Contour-Based Atlas Registration Model Applied to Automatic Subthalamic Nucleus Targeting on MRI: Method and Validation. - Valerie Duay; Xavier Bresson; F. Javier Sánchez Castro; Claudio Pollo; Meritxell Bach Cuadra; Jean-Philippe Thiran (MICCAI (2), 2008)

Bi-planar 2D-to-3D registration in Fourier domain for stereoscopic x-ray motion tracking. - Dominique Zosso; Benoît Le Callennec; Meritxell Bach Cuadra; Kamiar Aminian; Brigitte M. Jolles; Jean-Philippe Thiran (Image Processing, 2008)

A Surface-Based Approach to Quantify Local Cortical Gyrification. - Marie Schaer; Meritxell Bach Cuadra; Lucas Tamarit; François Lazeyras; Stephan Eliez; Jean-Philippe Thiran (IEEE Trans. Medical Imaging, 2008)

A multidimensional segmentation evaluation for medical image data. - Rubén Cárdenes; Rodrigo de Luis García; Meritxell Bach Cuadra (Comput. Methods Programs Biomed., 2009)

Segmentation of Head and Neck Lymph Node Regions for Radiotherapy Planning Using Active Contour-Based Atlas Registration. - Subrahmanyam Gorthi; Valerie Duay; Nawal Houhou; Meritxell Bach Cuadra; Ulrike Schick; Minerva Becker; Abdelkarim Allal; Jean-Philippe Thiran (IEEE J. Sel. Top. Signal Process., 2009)

Towards a diffusion image processing validation and accuracy prediction framework. - Francesca Pizzorni Ferrarese; Alessandro Daducci; Meritxell Bach Cuadra; Alia Lemkaddem; Cristina Granziera; Jean-Philippe Thiran; Gloria Menegaz (ICIP, 2011)

Comparison of energy minimization methods for 3-D brain tissue classification. - Subrahmanyam Gorthi; Jean-Philippe Thiran; Meritxell Bach Cuadra (ICIP, 2011)

An efficient segmentation method for ultrasound images based on a semi-supervised approach and patch-based features. - Anca Ciurte; Nawal Houhou; Sergiu Nedevschi; Alessia Pica; Francis L. Munier; Jean-Philippe Thiran; Xavier Bresson; Meritxell Bach Cuadra (ISBI, 2011)

A review of atlas-based segmentation for magnetic resonance brain images. - Mariano Cabezas; Arnau Oliver; Xavier Lladó; Jordi Freixenet; Meritxell Bach Cuadra (Comput. Methods Programs Biomed., 2011)

Active deformation fields: Dense deformation field estimation for atlas-based segmentation using the active contour framework. - Subrahmanyam Gorthi; Valerie Duay; Xavier Bresson; Meritxell Bach Cuadra; F. Javier Sánchez Castro; Claudio Pollo; Abdelkarim Allal; Jean-Philippe Thiran (Medical Image Anal., 2011)

On the convergence of EM-like algorithms for image segmentation using Markov random fields. - Alexis Roche; Delphine Ribes; Meritxell Bach Cuadra; Gunnar Krüger (Medical Image Anal., 2011)

Evaluation of atlas fusion strategies for segmentation of head and neck lymph nodes for radiotherapy planning. - Subrahmanyam Gorthi; Meritxell Bach Cuadra; Ulrike Schick; Pierre-Alain Tercier; Abdelkarim Allal; Jean-Philippe Thiran (ISBI, 2012)

Weighted Shape-Based Averaging With Neighborhood Prior Model for Multiple Atlas Fusion-Based Medical Image Segmentation. - Subrahmanyam Gorthi; Meritxell Bach Cuadra; Pierre-Alain Tercier; Abdelkarim Allal; Jean-Philippe Thiran (IEEE Signal Process. Lett., 2013)

Simulation-based evaluation of susceptibility distortion correction methods in diffusion MRI for connectivity analysis. - Oscar Esteban; Alessandro Daducci; Emmanuel Caruyer; Kieran O'Brien; María J. Ledesma-Carbayo; Meritxell Bach Cuadra; Andrés Santos (ISBI, 2014)

Efficient Total Variation Algorithm for Fetal Brain MRI Reconstruction. - Sébastien Tourbier; Xavier Bresson; Patric Hagmann; Jean-Philippe Thiran; Reto Meuli; Meritxell Bach Cuadra (MICCAI (2), 2014)

MBIS: Multivariate Bayesian Image Segmentation tool. - Oscar Esteban; Gert Wollny; Subrahmanyam Gorthi; María J. Ledesma-Carbayo; Jean-Philippe Thiran; Andrés Santos; Meritxell Bach Cuadra (Comput. Methods Programs Biomed., 2014)

Evaluation and Comparison of Current Fetal Ultrasound Image Segmentation Methods for Biometric Measurements: A Grand Challenge. - Sylvia Rueda; Sana Fathima; Caroline L. Knight; Mohammad Yaqub; Aris T. Papageorghiou; Bahbibi Rahmatullah; Alessandro Foi; Matteo Maggioni; Antonietta Pepe; Jussi Tohka; Richard V. Stebbing; John McManigle; et al. (IEEE Trans. Medical Imaging, 2014)

Automatic brain extraction in fetal MRI using multi-atlas-based segmentation. - Sébastien Tourbier; Patric Hagmann; Maud Cagneaux; Laurent Guibaud; Subrahmanyam Gorthi; Marie Schaer; Jean-Philippe Thiran; Reto Meuli; Meritxell Bach Cuadra (Image Processing, 2015)

An efficient total variation algorithm for super-resolution in fetal brain MRI with adaptive regularization. - Sébastien Tourbier; Xavier Bresson; Patric Hagmann; Jean-Philippe Thiran; Reto Meuli; Meritxell Bach Cuadra (NeuroImage, 2015)

Landmark Detection for Fusion of Fundus and MRI Toward a Patient-Specific Multimodal Eye Model. - Sandro I. De Zanet; Carlos Ciller; Tobias Rudolph; Philippe Maeder; Francis L. Munier; Aubin Balmer; Meritxell Bach Cuadra; Jens Kowal (IEEE Trans. Biomed. Eng., 2015)

Diffantom: Whole-Brain Diffusion MRI Phantoms Derived from Real Datasets of the Human Connectome Project. - Oscar Esteban; Emmanuel Caruyer; Alessandro Daducci; Meritxell Bach Cuadra; María J. Ledesma-Carbayo; Andrés Santos (Frontiers Neuroinformatics, 2016)

Surface-driven registration method for the structure-informed segmentation of diffusion MR images. - Oscar Esteban; Dominique Zosso; Alessandro Daducci; Meritxell Bach Cuadra; María J. Ledesma-Carbayo; Jean-Philippe Thiran; Andrés Santos (NeuroImage, 2016)

Segmentation of Cortical and Subcortical Multiple Sclerosis Lesions Based on Constrained Partial Volume Modeling. - Mário João Fartaria; Alexis Roche; Reto Meuli; Cristina Granziera; Tobias Kober; Meritxell Bach Cuadra (MICCAI (3), 2017)

Towards an Automated Segmentation of the Ventro-Intermediate Thalamic Nucleus. - Elena Najdenovska; Constantin Tuleasca; João Jorge; José P. Marques; Philippe Maeder; Jean-Philippe Thiran; Marc Levivier; Meritxell Bach Cuadra (CARE/CLIP@MICCAI, 2017)

Automated template-based brain localization and extraction for fetal brain MRI reconstruction. - Sébastien Tourbier; Clemente Velasco-Annis; Vahid Taimouri; Patric Hagmann; Reto Meuli; Simon K. Warfield; Meritxell Bach Cuadra; Ali Gholipour (NeuroImage, 2017)

Ocular Structures Segmentation from Multi-sequences MRI Using 3D Unet with Fully Connected CRFs. - Huu-Giao Nguyen; Alessia Pica; Philippe Maeder; Ann Schalenbourg; Marta Peroni; Jan Hrbacek; Damien C. Weber; Meritxell Bach Cuadra; Raphael Sznitman (COMPAY/OMIA@MICCAI, 2018)

Shallow vs Deep Learning Architectures for White Matter Lesion Segmentation in the Early Stages of Multiple Sclerosis. - Francesco La Rosa; Mário João Fartaria; Tobias Kober; Jonas Richiardi; Cristina Granziera; Jean-Philippe Thiran; Meritxell Bach Cuadra (BrainLes@MICCAI (1), 2018)

A novel segmentation framework for uveal melanoma in magnetic resonance imaging based on class activation maps. - Huu-Giao Nguyen; Alessia Pica; Jan Hrbacek; Damien C. Weber; Francesco La Rosa; Ann Schalenbourg; Raphael Sznitman; Meritxell Bach Cuadra (MIDL, 2019)

T2 Mapping from Super-Resolution-Reconstructed Clinical Fast Spin Echo Magnetic Resonance Acquisitions. - Hélène Lajous; Tom Hilbert; Christopher W. Roy; Sébastien Tourbier; Priscille de Dumast; Thomas Yu; Jean-Philippe Thiran; Jean-Baptiste Ledoux; Davide Piccini; Patric Hagmann; Reto Meuli; Tobias Kober; et al. (MICCAI (2), 2020)

An Anatomically-Informed 3D CNN for Brain Aneurysm Classification with Weak Labels. - Tommaso Di Noto; Guillaume Marie; Sébastien Tourbier; Yasser Alemán-Gómez; Guillaume Saliou; Meritxell Bach Cuadra; Patric Hagmann; Jonas Richiardi (MLCN/RNO-AI@MICCAI, 2020)

Automated Detection of Cortical Lesions in Multiple Sclerosis Patients with 7T MRI. - Francesco La Rosa; Erin S. Beck; Ahmed Abdulkadir; Jean-Philippe Thiran; Daniel S. Reich; Pascal Sati; Meritxell Bach Cuadra (MICCAI (4), 2020)

A comparison of automatic multi-tissue segmentation methods of the human fetal brain using the FeTA Dataset. - Kelly Payette; Priscille de Dumast; Hamza Kebiri; Ivan Ezhov; Johannes C. Paetzold; Suprosanna Shit; Asim Iqbal; Romesa Khan; Raimund Kottke; Patrice Grehten; Hui Ji; Levente Lanczi; et al. (CoRR, 2020)

Higher Order Spherical Harmonics Reconstruction of Fetal Diffusion MRI With Intensity Correction. - Maria Deprez; Anthony Price; Daan Christiaens; Georgia Lockwood Estrin; Lucilio Cordero-Grande; Jana Hutter; Alessandro Daducci; Jacques-Donald Tournier; Mary A. Rutherford; Serena J. Counsell; Meritxell Bach Cuadra; Joseph V. Hajnal (IEEE Trans. Medical Imaging, 2020)

Segmentation of the Cortical Plate in Fetal Brain MRI with a Topological Loss. - Priscille de Dumast; Hamza Kebiri; Chirine Atat; Vincent Dunet; Mériam Koob; Meritxell Bach Cuadra (UNSURE/PIPPI@MICCAI, 2021)

Quantitative Evaluation of Enhanced Multi-plane Clinical Fetal Diffusion MRI with a Crossing-Fiber Phantom. - Hamza Kebiri; Hélène Lajous; Yasser Alemán-Gómez; Gabriel Girard; Erick Jorge Canales-Rodríguez; Sébastien Tourbier; Marco Pizzolato; Jean-Baptiste Ledoux; Eleonora Fornari; András Jakab; Meritxell Bach Cuadra (CDMRI@MICCAI, 2021)

Simulated Half-Fourier Acquisitions Single-shot Turbo Spin Echo (HASTE) of the Fetal Brain: Application to Super-Resolution Reconstruction. - Hélène Lajous; Tom Hilbert; Christopher W. Roy; Sébastien Tourbier; Priscille de Dumast; Yasser Alemán-Gómez; Thomas Yu; Hamza Kebiri; Jean-Baptiste Ledoux; Patric Hagmann; Reto Meuli; Vincent Dunet; et al. (UNSURE/PIPPI@MICCAI, 2021)

Diagnostic Surveillance of High-Grade Gliomas: Towards Automated Change Detection Using Radiology Report Classification. - Tommaso Di Noto; Chirine Atat; Eduardo Gamito Teiga; Monika Hegi; Andreas Hottinger; Meritxell Bach Cuadra; Patric Hagmann; Jonas Richiardi (PKDD/ECML Workshops (2), 2021)

MPRAGE to MP2RAGE UNI translation via generative adversarial network improves the automatic tissue and lesion segmentation in multiple sclerosis patients. - Francesco La Rosa; Thomas Yu; Germán Barquero; Jean-Philippe Thiran; Cristina Granziera; Meritxell Bach Cuadra (Comput. Biol. Medicine, 2021)

Weak labels and anatomical knowledge: making deep learning practical for intracranial aneurysm detection in TOF-MRA. - Tommaso Di Noto; Guillaume Marie; Sébastien Tourbier; Yasser Alemán-Gómez; Oscar Esteban; Guillaume Saliou; Meritxell Bach Cuadra; Patric Hagmann; Jonas Richiardi (CoRR, 2021)

FaBiAN: A Fetal Brain magnetic resonance Acquisition Numerical phantom. - Hélène Lajous; Christopher W. Roy; Tom Hilbert; Priscille de Dumast; Sébastien Tourbier; Yasser Alemán-Gómez; Jérôme Yerly; Thomas Yu; Hamza Kebiri; Kelly Payette; Jean-Baptiste Ledoux; Reto Meuli; et al. (CoRR, 2021)

4D iterative reconstruction of brain fMRI in the moving fetus. - Athena Taymourtash; Hamza Kebiri; Sébastien Tourbier; Ernst Schwartz; Karl-Heinz Nenning; Roxane Licandro; Daniel Sobotka; Hélène Lajous; Priscille de Dumast; Meritxell Bach Cuadra; Georg Langs (CoRR, 2021)

Model-informed machine learning for multi-component T2 relaxometry. - Thomas Yu; Erick Jorge Canales-Rodríguez; Marco Pizzolato; Gian Franco Piredda; Tom Hilbert; Elda Fischi Gomez; Matthias Weigel; Muhamed Barakovic; Meritxell Bach Cuadra; Cristina Granziera; Tobias Kober; Jean-Philippe Thiran (Medical Image Anal., 2021)

Synthetic Magnetic Resonance Images for Domain Adaptation: Application to Fetal Brain Tissue Segmentation. - Priscille de Dumast; Hamza Kebiri; Kelly Payette; András Jakab; Hélène Lajous; Meritxell Bach Cuadra (ISBI, 2022)

Slice Estimation in Diffusion MRI of Neonatal and Fetal Brains in Image and Spherical Harmonics Domains Using Autoencoders. - Hamza Kebiri; Gabriel Girard; Yasser Alemán-Gómez; Thomas Yu; András Jakab; Erick Jorge Canales-Rodríguez; Meritxell Bach Cuadra (CDMRI@MICCAI, 2022)

Spatio-Temporal Motion Correction and Iterative Reconstruction of In-Utero Fetal fMRI. - Athena Taymourtash; Hamza Kebiri; Ernst Schwartz; Karl-Heinz Nenning; Sébastien Tourbier; Gregor Kasprian; Daniela Prayer; Meritxell Bach Cuadra; Georg Langs (MICCAI (6), 2022)

Cortical lesions, central vein sign, and paramagnetic rim lesions in multiple sclerosis: emerging machine learning techniques and future avenues. - Francesco La Rosa; Maxence Wynen; Omar Al-Louzi; Erin S. Beck; Till Huelnhagen; Pietro Maggi; Jean-Philippe Thiran; Tobias Kober; Russell T. Shinohara; Pascal Sati; Daniel S. Reich; Cristina Granziera; et al. (CoRR, 2022)

Validation and Generalizability of Self-Supervised Image Reconstruction Methods for Undersampled MRI. - Thomas Yu; Tom Hilbert; Gian Franco Piredda; Arun Joseph; Gabriele Bonanno; Salim Zenkhri; Patrick Omoumi; Meritxell Bach Cuadra; Erick Jorge Canales-Rodríguez; Tobias Kober; Jean-Philippe Thiran (CoRR, 2022)

Fetal Brain Tissue Annotation and Segmentation Challenge Results. - Kelly Payette; Hongwei Li 004; Priscille de Dumast; Roxane Licandro; Hui Ji; Md Mahfuzur Rahman Siddiquee; Daguang Xu; Andriy Myronenko; Hao Liu; Yuchen Pei; Lisheng Wang; Ying Peng; et al. (CoRR, 2022)

Shifts 2.0: Extending The Dataset of Real Distributional Shifts. - Andrey Malinin; Andreas Athanasopoulos; Muhamed Barakovic; Meritxell Bach Cuadra; Mark J. F. Gales; Cristina Granziera; Mara Graziani; Nikolay Kartashev; Konstantinos Kyriakopoulos; Po-Jui Lu; Nataliia Molchanova; Antonis Nikitakis; et al. (CoRR, 2022)

Transfer learning with weak labels from radiology reports: application to glioma change detection. - Tommaso Di Noto; Meritxell Bach Cuadra; Chirine Atat; Eduardo Gamito Teiga; Monika Hegi; Andreas Hottinger; Patric Hagmann; Jonas Richiardi (CoRR, 2022)

Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping. - Sébastien Tourbier; Joan Rué Queralt; Katharina Glomb; Yasser Alemán-Gómez; Emeline Mullier; Alessandra Griffa; Mikkel Schöttner; Jonathan Wirsich; Mustafa Anil Tuncel; Jakub Jancovic; Meritxell Bach Cuadra; Patric Hagmann (J. Open Source Softw., 2022)

Domain Generalization in Fetal Brain MRI Segmentation with Multi-Reconstruction Augmentation. - Priscille de Dumast; Meritxell Bach Cuadra (ISBI, 2023)

Self-Supervised Isotropic Superresolution Fetal Brain MRI. - Kay Lächler; Hélène Lajous; Michael Unser; Meritxell Bach Cuadra; Pol del Aguila Pla (ISBI, 2023)

Novel Structural-Scale Uncertainty Measures and Error Retention Curves: Application to Multiple Sclerosis. - Nataliia Molchanova; Vatsal Raina; Andrey Malinin; Francesco La Rosa; Henning Müller; Mark J. F. Gales; Cristina Granziera; Mara Graziani; Meritxell Bach Cuadra (ISBI, 2023)

Tackling Bias in the Dice Similarity Coefficient: Introducing NDSC for White Matter Lesion Segmentation. - Vatsal Raina; Nataliia Molchanova; Mara Graziani; Andrey Malinin; Henning Müller; Meritxell Bach Cuadra; Mark J. F. Gales (ISBI, 2023)

Simulation-Based Parameter Optimization for Fetal Brain MRI Super-Resolution Reconstruction. - Priscille de Dumast; Thomas Sanchez; Hélène Lajous; Meritxell Bach Cuadra (MICCAI (7), 2023)

Robust Estimation of the Microstructure of the Early Developing Brain Using Deep Learning. - Hamza Kebiri; Ali Gholipour; Rizhong Lin; Lana Vasung; Davood Karimi; Meritxell Bach Cuadra (MICCAI (7), 2023)

FetMRQC: Automated Quality Control for Fetal Brain MRI. - Thomas Sanchez; Oscar Esteban; Yvan Gomez; Elisenda Eixarch; Meritxell Bach Cuadra (PIPPI@MICCAI, 2023)

Direct segmentation of brain white matter tracts in diffusion MRI. - Hamza Kebiri; Ali Gholipour; Meritxell Bach Cuadra; Davood Karimi (CoRR, 2023)

FetMRQC: an open-source machine learning framework for multi-centric fetal brain MRI quality control. - Thomas Sanchez; Oscar Esteban; Yvan Gomez; Alexandre Pron; Mériam Koob; Vincent Dunet; Nadine Girard; András Jakab; Elisenda Eixarch; Guillaume Auzias; Meritxell Bach Cuadra (CoRR, 2023)

Towards Automated Brain Aneurysm Detection in TOF-MRA: Open Data, Weak Labels, and Anatomical Knowledge. - Tommaso Di Noto; Guillaume Marie; Sébastien Tourbier; Yasser Alemán-Gómez; Oscar Esteban; Guillaume Saliou; Meritxell Bach Cuadra; Patric Hagmann; Jonas Richiardi (Neuroinformatics, 2023)

BigBrain-MR: a new digital phantom with anatomically-realistic magnetic resonance properties at 100-µm resolution for magnetic resonance methods development. - Cristina Sainz Martinez; Meritxell Bach Cuadra; João Jorge (NeuroImage, 2023)

Fetal brain tissue annotation and segmentation challenge results. - Kelly Payette; Hongwei Bran Li; Priscille de Dumast; Roxane Licandro; Hui Ji; Md Mahfuzur Rahman Siddiquee; Daguang Xu; Andriy Myronenko; Hao Liu; Yuchen Pei; Lisheng Wang; Ying Peng; et al. (Medical Image Anal., 2023)

Cross-Age and Cross-Site Domain Shift Impacts on Deep Learning-Based White Matter Fiber Estimation in Newborn and Baby Brains. - Rizhong Lin; Ali Gholipour; Jean-Philippe Thiran; Davood Karimi; Hamza Kebiri; Meritxell Bach Cuadra (ISBI, 2024)

Conflunet: Improving Confluent Lesion Identification In Multiple Sclerosis With Instance Segmentation. - Maxence Wynen; Maxime Istasse; Pedro M. Gordaliza; Anna Stölting; Pietro Maggi; Benoît Macq; Meritxell Bach Cuadra (ISBI, 2024)

Towards Longitudinal Characterization of Multiple Sclerosis Atrophy Employing SynthSeg Framework and Normative Modeling. - Pedro M. Gordaliza; Nataliia Molchanova; Maxence Wynen; Pietro Maggi; Alessandro Cagol; Cristina Granziera; Meritxell Bach Cuadra (LDTM/MMMI/ML4MHD/ML-CDS@MICCAI, 2024)

Ground-Truth Effects in Learning-Based Fiber Orientation Distribution Estimation in Neonatal Brains. - Rizhong Lin; Hamza Kebiri; Ali Gholipour; Yufei Chen 002; Jean-Philippe Thiran; Davood Karimi; Meritxell Bach Cuadra (CDMRI@MICCAI, 2024)

Interpretability of Uncertainty: Exploring Cortical Lesion Segmentation in Multiple Sclerosis. - Nataliia Molchanova; Alessandro Cagol; Pedro M. Gordaliza; Mario Ocampo-Pineda; Po-Jui Lu; Matthias Weigel; Xinjie Chen; Adrien Depeursinge; Cristina Granziera; Henning Müller; Meritxell Bach Cuadra (ISIC/iMIMIC/EARTH/DeCaF@MICCAI, 2024)

Assessing Data Quality on Fetal Brain MRI Reconstruction: A Multi-site and Multi-rater Study. - Thomas Sanchez; Angeline Mihailov; Yvan Gomez; Gerard Martí-Juan; Elisenda Eixarch; András Jakab; Vincent Dunet; Mériam Koob; Guillaume Auzias; Meritxell Bach Cuadra (PIPPI@MICCAI, 2024)

Exploiting XAI Maps to Improve MS Lesion Segmentation and Detection in MRI. - Federico Spagnolo; Nataliia Molchanova; Mario Ocampo-Pineda; Lester Melie-García; Meritxell Bach Cuadra; Cristina Granziera; Vincent Andrearczyk; Adrien Depeursinge (ISIC/iMIMIC/EARTH/DeCaF@MICCAI, 2024)

Improving Cross-Domain Brain Tissue Segmentation in Fetal MRI with Synthetic Data. - Vladyslav Zalevskyi; Thomas Sanchez; Margaux Roulet; Jordina Aviles Verdera; Jana Hutter; Hamza Kebiri; Meritxell Bach Cuadra (MICCAI (1), 2024)

Instance-level quantitative saliency in multiple sclerosis lesion segmentation. - Federico Spagnolo; Nataliia Molchanova; Roger Schaer; Meritxell Bach Cuadra; Mario Ocampo-Pineda; Lester Melie-García; Cristina Granziera; Vincent Andrearczyk; Adrien Depeursinge (CoRR, 2024)

Maximizing domain generalization in fetal brain tissue segmentation: the role of synthetic data generation, intensity clustering and real image fine-tuning. - Vladyslav Zalevskyi; Thomas Sanchez; Margaux Roulet; Hélène Lajous; Jordina Aviles Verdera; Jana Hutter; Hamza Kebiri; Meritxell Bach Cuadra (CoRR, 2024)

Deep learning microstructure estimation of developing brains from diffusion MRI: A newborn and fetal study. - Hamza Kebiri; Ali Gholipour; Rizhong Lin; Lana Vasung; Camilo Calixto; Zeljka Krsnik; Davood Karimi; Meritxell Bach Cuadra (Medical Image Anal., 2024)

FetMRQC: A robust quality control system for multi-centric fetal brain MRI. - Thomas Sanchez; Oscar Esteban; Yvan Gomez; Alexandre Pron; Mériam Koob; Vincent Dunet; Nadine Girard; András Jakab; Elisenda Eixarch; Guillaume Auzias; Meritxell Bach Cuadra (Medical Image Anal., 2024)

Explainable AI and Trust, Design Methodologies to Explore Patients' Perspective. - Wen Zhan; Margherita Motta; Sebastian Baez-Lugo; Nicolas Henchoz; Meritxell Bach Cuadra; Delphine Ribes Lemay (CBMS, 2025)

Structural-based uncertainty in deep learning across anatomical scales: Analysis in white matter lesion segmentation. - Nataliia Molchanova; Vatsal Raina; Andrey Malinin; Francesco La Rosa; Adrien Depeursinge; Mark J. F. Gales; Cristina Granziera; Henning Müller; Mara Graziani; Meritxell Bach Cuadra (Comput. Biol. Medicine, 2025)

Automatic quality control in multi-centric fetal brain MRI super-resolution reconstruction. - Thomas Sanchez; Vladyslav Zalevskyi; Angeline Mihailov; Gerard Martí-Juan; Elisenda Eixarch; András Jakab; Vincent Dunet; Mériam Koob; Guillaume Auzias; Meritxell Bach Cuadra (CoRR, 2025)

Assessing workflow impact and clinical utility of AI-assisted brain aneurysm detection: a multi-reader study. - Tommaso Di Noto; Sofyan Jankowski; Francesco Puccinelli; Guillaume Marie; Sébastien Tourbier; Yasser Alemán-Gómez; Oscar Esteban; Ricardo Corredor-Jerez; Guillaume Saliou; Patric Hagmann; Meritxell Bach Cuadra; Jonas Richiardi (CoRR, 2025)

Multi-Center Fetal Brain Tissue Annotation (FeTA) Challenge 2022 Results. - Kelly Payette; Céline Steger; Roxane Licandro; Priscille de Dumast; Hongwei Bran Li; Matthew J. Barkovich; Liu Li; Maik Dannecker; Chen Chen 042; Cheng Ouyang; Niccolò McConnell; Alina Dana Miron; et al. (IEEE Trans. Medical Imaging, 2025)

Explainability of AI Uncertainty: Application to Multiple Sclerosis Lesion Segmentation on MRI. - Nataliia Molchanova; Pedro M. Gordaliza; Alessandro Cagol; Mario Ocampo-Pineda; Po-Jui Lu; Matthias Weigel; Xinjie Chen; Erin S. Beck; Haris Tsagkas; Daniel S. Reich; Anna Stölting; Pietro Maggi; et al. (CoRR, 2025)

Towards contrast- and pathology-agnostic clinical fetal brain MRI segmentation using SynthSeg. - Ziyao Shang; Misha P. T. Kaandorp; Kelly Payette; Marina Fernandez Garcia; Roxane Licandro; Georg Langs; Jordina Aviles Verdera; Jana Hutter; Bjoern H. Menze; Gregor Kasprian; Meritxell Bach Cuadra; András Jakab (CoRR, 2025)

Advances in Automated Fetal Brain MRI Segmentation and Biometry: Insights from the FeTA 2024 Challenge. - Vladyslav Zalevskyi; Thomas Sanchez; Misha P. T. Kaandorp; Margaux Roulet; Diego Fajardo Rojas; Liu Li; Jana Hutter; Hongwei Bran Li; Matthew J. Barkovich; Hui Ji; Luca Wilhelmi; Aline Dändliker; et al. (CoRR, 2025)

Meta-learning Slice-to-Volume Reconstruction in Fetal Brain MRI using Implicit Neural Representations. - Maik Dannecker; Thomas Sanchez; Meritxell Bach Cuadra; Özgün Turgut; Anthony N. Price; Lucilio Cordero-Grande; Vanessa Kyriakopoulou; Joseph V. Hajnal; Daniel Rueckert (CoRR, 2025)

Benchmarking and Explaining Deep Learning Cortical Lesion MRI Segmentation in Multiple Sclerosis. - Nataliia Molchanova; Alessandro Cagol; Mario Ocampo-Pineda; Po-Jui Lu; Matthias Weigel; Xinjie Chen; Erin S. Beck; Charidimos Tsagkas; Daniel S. Reich; Colin Vanden Bulcke; Anna Stölting; Serena Borrelli; et al. (CoRR, 2025)

The added value for MRI radiomics and deep-learning for glioblastoma prognostication compared to clinical and molecular information. - Daniel Abler; O. Pusterla; A. Joye-Kühnis; Nicolaus Andratschke; Meritxell Bach; A. Bink; S. M. Christ; Patric Hagmann; B. Pouymayou; E. Pravatà; Piotr Radojewski; Mauricio Reyes 001; et al. (CoRR, 2025)

Physics-Informed Joint Multi-TE Super-Resolution with Implicit Neural Representation for Robust Fetal T2 Mapping. - Busra Bulut; Maik Dannecker; Thomas Sanchez; Sara Neves Silva; Vladyslav Zalevskyi; Steven Jia; Jean-Baptiste Ledoux; Guillaume Auzias; François Rousseau 002; Jana Hutter; Daniel Rueckert; Meritxell Bach Cuadra (CoRR, 2025)