Trustworthiness and metrics in visualizing similarity of gene expression. - Samuel Kaski; Janne Nikkilä; Merja Oja; Jarkko Venna; Petri Törönen; Eero Castrén (BMC Bioinform., 2003)

Grouping and visualizing human endogenous retroviruses by bootstrapping median self-organizing maps. - Merja Oja; Göran O. Sperber; Jonas Blomberg; Samuel Kaski (CIBCB, 2004)

Self-organizing map-based discovery and visualization of human endogenous retroviral sequence groups. - Merja Oja; Göran O. Sperber; Jonas Blomberg; Samuel Kaski (Int. J. Neural Syst., 2005)

In Silico Expression Profiles of Human Endogenous Retroviruses. - Merja Oja (PRIB, 2007)

Methods for estimating human endogenous retrovirus activities from EST databases. - Merja Oja; Jaakko Peltonen; Jonas Blomberg; Samuel Kaski (BMC Bioinform., 2007)

Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae. - Erno Lindfors; Paula Jouhten; Merja Oja; Eija Rintala; Matej Oresic; Merja Penttilä (BMC Syst. Biol., 2014)

Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species. - Esa Pitkänen; Paula Jouhten; Jian Hou 007; Muhammad Fahad Syed; Peter Blomberg; Jana Kludas; Merja Oja; Liisa Holm; Merja Penttilä; Juho Rousu; Mikko Arvas (PLoS Comput. Biol., 2014)