A conceptual cellular interaction model of left ventricular remodelling post-MI: dynamic network with exit-entry competition strategy. - Yunji Wang; Hai-Chao Han; Jack Y. Yang; Merry Lindsey; Yufang Jin (BMC Syst. Biol., 2010)

Targeting myocardial infarction-specific protein interaction network using computational analyses. - Nguyen T. Nguyen; Xiaolin Zhang; Yunji Wang; Hai-Chao Han; Yufang Jin; Galen Schmidt; Richard A. Lange; Robert J. Chilton; Merry Lindsey (GENSiPS, 2011)

Mathematical modeling of macrophage activation in left ventricular remodeling post-myocardial infarction. - Yunji Wang; Yufang Jin; Yonggang Ma; Ganesh V. Halade; Merry L. Lindsey (GENSiPS, 2011)

Bayesian parameter estimation for nonlinear modelling of biological pathways. - Omid Ghasemi; Merry Lindsey; Tianyi Yang; Nguyen T. Nguyen; Yufei Huang 001; Yufang Jin (BMC Syst. Biol., 2011)

Combining experimental and mathematical modeling to reveal mechanisms of macrophage-dependent left ventricular remodeling. - Yufang Jin; Hai-Chao Han; Jamie Berger; Qiuxia Dai; Merry Lindsey (BMC Syst. Biol., 2011)

A biclustering approach to analyze drug effects on extracellular matrix remodeling post-myocardial infarction. - Omid Ghasemi; Nguyen T. Nguyen; Trevi A. Ramirez; Jianhua Zhang; Merry Lindsey; Yufang Jin (BIBM Workshops, 2012)

Mathematical modeling of left ventricular dimensional changes in mice during aging. - Tianyi Yang; Ying Ann Chiao; Yunji Wang; Andrew Voorhees; Hai-Chao Han; Merry Lindsey; Yufang Jin (BMC Syst. Biol., 2012)

Temporal clustering of gene expression patterns using short-time segments. - Nguyen T. Nguyen; Ying Ann Chiao; Yufei Huang 001; Shou-Jiang Gao; Merry Lindsey; Yidong Chen 002; Yufang Jin (Int. J. Funct. Informatics Pers. Medicine, 2012)

Parameter distribution estimation in first order ODE. - Tianyi Yang; Nguyen T. Nguyen; Yufang Jin; Merry Lindsey (GENSiPS, 2013)

Integrative Computational and Experimental Approaches to Establish a Post-Myocardial Infarction Knowledge Map. - Nguyen T. Nguyen; Xiaolin Zhang; Cathy Wu 001; Richard A. Lange; Robert J. Chilton; Merry L. Lindsey; Yufang Jin (PLoS Comput. Biol., 2014)