TEINet: a deep learning framework for prediction of TCR-epitope binding specificity. - Yuepeng Jiang; Miaozhe Huo; Shuai Cheng Li 001 (Briefings Bioinform., 2023)

DeepTAPE: Enhancing Systemic Lupus Erythematosus Diagnosis with Deep Learning Based on TCRβ CDR3 Sequences. - Tongfei Shen; Miaozhe Huo; Wan Nie; Kaiqi Li; Ziwei Ma; Xikang Feng; Shuai Cheng Li (BIBM, 2024)

A comprehensive benchmarking for evaluating TCR embeddings in modeling TCR-epitope interactions. - Xikang Feng; Miaozhe Huo; He Li; Yongze Yang; Yuepeng Jiang; Liang He; Shuai Cheng Li (Briefings Bioinform., 2024)

Unlocking T-cell receptor-epitope insights with structural analysis. - Miaozhe Huo; Yuepeng Jiang; Shuai Cheng Li 001 (Nat. Comput. Sci., 2024)