NATbox: a network analysis toolbox in R. - Shweta S. Chavan; Michael A. Bauer 002; Marco Scutari; Radhakrishnan Nagarajan (BMC Bioinform., 2009)

Towards the integration, annotation and association of historical microarray experiments with RNA-seq. - Shweta S. Chavan; Michael A. Bauer 002; Erich A. Peterson; Christoph J. Heuck; Donald J. Johann (BMC Bioinform., 2013)

Leveraging the new with the old: providing a framework for the integration of historic microarray studies with next generation sequencing. - Michael A. Bauer 002; Shweta S. Chavan; Erich A. Peterson; Christoph J. Heuck; Donald J. Johann (BMC Bioinform., 2014)

XLPM: efficient algorithm for the analysis of protein-protein contacts using chemical cross-linking mass spectrometry. - Mihir Jaiswal; Nathaniel Crabtree; Michael A. Bauer 002; Roger A. Hall; Kevin D. Raney; Boris L. Zybailov (BMC Bioinform., 2014)

Revealing the inherent heterogeneity of human malignancies by variant consensus strategies coupled with cancer clonal analysis. - Erich A. Peterson; Shweta S. Chavan; Michael A. Bauer 002; Christoph J. Heuck; Donald J. Johann (BMC Bioinform., 2014)

WikiHyperGlossary (WHG): an information literacy technology for chemistry documents. - Michael A. Bauer 002; Daniel Berleant; Andrew P. Cornell; Robert E. Belford (J. Cheminformatics, 2015)

TarPan: an easily adaptable targeted sequencing panel viewer for research and clinical use. - Cody Ashby; Michael W. Rutherford; Michael A. Bauer 002; Erich A. Peterson; Yan Wang; Eileen M. Boyle; Christopher Paul Wardell; Brian A. Walker (BMC Bioinform., 2020)

FiNGS: high quality somatic mutations using filters for next generation sequencing. - Christopher Paul Wardell; Cody Ashby; Michael Anton Bauer (BMC Bioinform., 2021)