The Simbios National Center: Systems Biology in Motion. - Jeanette P. Schmidt; Scott L. Delp; Michael A. Sherman; Charles A. Taylor; Vijay S. Pande; Russ B. Altman (Proc. IEEE, 2008)

Fast Flexible Modeling of RNA Structure Using Internal Coordinates. - Samuel Coulbourn Flores; Michael A. Sherman; Christopher M. Bruns; Peter K. Eastman; Russ B. Altman (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Simbios: an NIH national center for physics-based simulation of biological structures. - Scott L. Delp; Joy P. Ku; Vijay S. Pande; Michael A. Sherman; Russ B. Altman (J. Am. Medical Informatics Assoc., 2012)

OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement. - Ajay Seth; Jennifer L. Hicks; Thomas K. Uchida; Ayman Habib 003; Christopher L. Dembia; James J. Dunne; Carmichael F. Ong; Matthew S. DeMers; Apoorva Rajagopal; Matthew Millard; Samuel R. Hamner; Edith M. Arnold; et al. (PLoS Comput. Biol., 2018)

A Transition-Aware Method for the Simulation of Compliant Contact With Regularized Friction. - Alejandro M. Castro; Ante Qu; Naveen Kuppuswamy; Alex Alspach; Michael Sherman 001 (IEEE Robotics Autom. Lett., 2020)

A Careful Examination of Large Behavior Models for Multitask Dexterous Manipulation. - TRI LBM Team; Jose Barreiros; Andrew Beaulieu; Aditya Bhat; Rick Cory; Eric Cousineau; Hongkai Dai; Ching-Hsin Fang; Kunimatsu Hashimoto; Muhammad Zubair Irshad; Masha Itkina; Naveen Kuppuswamy; et al. (CoRR, 2025)