Multiple sequence alignment as a sequence-to-sequence learning problem. - Edo Dotan; Yonatan Belinkov; Oren Avram; Elya Wygoda; Noa Ecker; Michael Alburquerque; Omri Keren; Gil Loewenthal; Tal Pupko (ICLR, 2023)

The tree reconstruction game: phylogenetic reconstruction using reinforcement learning. - Dana Azouri; Oz Granit; Michael Alburquerque; Yishay Mansour; Tal Pupko; Itay Mayrose (CoRR, 2023)

GenomeFLTR: filtering reads made easy. - Edo Dotan; Michael Alburquerque; Elya Wygoda; Dorothée Huchon; Tal Pupko (Nucleic Acids Res., 2023)

Statistical framework to determine indel-length distribution. - Elya Wygoda; Gil Loewenthal; Asher Moshe; Michael Alburquerque; Itay Mayrose; Tal Pupko (Bioinform., 2024)