FlyBase: a Drosophila database. The FlyBase consortium. - William M. Gelbart; Madeline A. Crosby; Beverley Matthews; W. P. Rindone; J. Chillemi; S. Russo Twombly; David B. Emmert; Michael Ashburner; Rachel A. Drysdale; E. Whitfield; Gillian H. Millburn; A. de Grey; et al. (Nucleic Acids Res., 1997)

A Methodology to Migrate the Gene Ontology to a Description Logic Environment Using DAML+OIL. - Chris Wroe; Robert Stevens 001; Carole A. Goble; Michael Ashburner (Pacific Symposium on Biocomputing, 2003)

A short study on the success of the Gene Ontology. - Michael Bada; Robert Stevens 001; Carole A. Goble; Yolanda Gil; Michael Ashburner; Judith A. Blake; J. Michael Cherry; Midori A. Harris; Suzanna Lewis (J. Web Semant., 2004)

Ontologies for Biologists - A Community Model for the Annotation of Genomic Data. - Michael Ashburner (CSB, 2005)

Combined Evidence Annotation of Transposable Elements in Genome Sequences. - Hadi Quesneville; Casey M. Bergman; Olivier Andrieu; Delphine Autard; Danielle Nouaud; Michael Ashburner; Dominique Anxolabéhère (PLoS Comput. Biol., 2005)

08131 Executive Summary – Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives. - Michael Ashburner; Ulf Leser; Dietrich Rebholz-Schuhmann (Ontologies and Text Mining for Life Sciences, 2008)

NLP and Phenotypes: using Ontologies to link Human Diseases to Animal Models. - Nicole L. Washington; M. Gibson; Chris Mungall; Michael Ashburner; Georgios V. Gkoutos; Monte Westerfield; Melissa A. Haendel; Suzanna E. Lewis (Ontologies and Text Mining for Life Sciences, 2008)

ChEBI: a database and ontology for chemical entities of biological interest. - Kirill Degtyarenko; Paula de Matos; Marcus Ennis; Janna Hastings; Martin Zbinden; Alan McNaught; Rafael Alcántara; Michael Darsow; Mickaël Guedj; Michael Ashburner (Nucleic Acids Res., 2008)

FlyBase: enhancing Drosophila Gene Ontology annotations. - Susan Tweedie; Michael Ashburner; Kathleen Falls; Paul C. Leyland; Peter McQuilton; Steven J. Marygold; Gillian H. Millburn; David Osumi-Sutherland; Andrew J. Schroeder; Ruth L. Seal; Haiyan Zhang (Nucleic Acids Res., 2009)