Blue Gene/L programming and operating environment. - José E. Moreira; George Almási 001; Charles Archer; Ralph Bellofatto; Peter Bergner; José R. Brunheroto; Michael Brutman; José G. Castaños; Paul Crumley; Manish Gupta 002; Todd Inglett; Derek Lieber; et al. (IBM J. Res. Dev., 2005)

Blue Gene system software - Design and implementation of a one-sided communication interface for the IBM eServer Blue Gene® supercomputer. - Michael Blocksome; Charles Archer; Todd Inglett; Patrick McCarthy; Michael B. Mundy; Joe Ratterman; A. Sidelnik; Brian E. Smith; George Almási 001; José G. Castaños; Derek Lieber; José E. Moreira; et al. (SC, 2006)

Blue Gene system software - Designing a highly-scalable operating system: the Blue Gene/L story. - José E. Moreira; Michael Brutman; José G. Castaños; Thomas Engelsiepen; Mark Giampapa; Tom Gooding; Roger L. Haskin; Todd Inglett; Derek Lieber; Patrick McCarthy; Michael B. Mundy; Jeff Parker; et al. (SC, 2006)

The Blue Gene/L Supercomputer: A Hardware and Software Story. - José E. Moreira; Valentina Salapura; George Almási 001; Charles Archer; Ralph Bellofatto; Peter Bergner; Randy Bickford; Matthias A. Blumrich; José R. Brunheroto; Arthur A. Bright; Michael Brutman; José G. Castaños; et al. (Int. J. Parallel Program., 2007)

Likelihood-Based Gene Annotations for Gap Filling and Quality Assessment in Genome-Scale Metabolic Models. - Matthew N. Benedict; Michael B. Mundy; Christopher S. Henry; Nicholas Chia; Nathan D. Price 001 (PLoS Comput. Biol., 2014)

MMinte: an application for predicting metabolic interactions among the microbial species in a community. - Helena Mendes-Soares; Michael B. Mundy; Luis Mendes Soares; Nicholas Chia (BMC Bioinform., 2016)

Mackinac: a bridge between ModelSEED and COBRApy to generate and analyze genome-scale metabolic models. - Michael B. Mundy; Helena Mendes-Soares; Nicholas Chia (Bioinform., 2017)

ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling of metabolic reconstructions. - Brendan King; Terry Farrah; Matthew A. Richards; Michael B. Mundy; Evangelos Simeonidis; Nathan D. Price 001 (Bioinform., 2018)

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes. - Samuel M. D. Seaver; Filipe Liu; Qizhi Zhang; James G. Jeffryes; José P. Faria; Janaka N. Edirisinghe; Michael B. Mundy; Nicholas Chia; Elad Noor; Moritz Emanuel Beber; Aaron A. Best; Matthew DeJongh; et al. (Nucleic Acids Res., 2021)

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes (Corrigendum). - Samuel M. D. Seaver; Filipe Liu; Qizhi Zhang; James G. Jeffryes; José P. Faria; Janaka N. Edirisinghe; Michael B. Mundy; Nicholas Chia; Elad Noor; Moritz Emanuel Beber; Aaron A. Best; Matthew DeJongh; et al. (Nucleic Acids Res., 2021)