PathSys: integrating molecular interaction graphs for systems biology. - Michael Baitaluk; Xufei Qian; Shubhada Godbole; Alpan Raval; Animesh Ray; Amarnath Gupta (BMC Bioinform., 2006)

BiologicalNetworks: visualization and analysis tool for systems biology. - Michael Baitaluk; Mayya Sedova; Animesh Ray; Amarnath Gupta (Nucleic Acids Res., 2006)

Data Mining by Navigation - An Experience with Systems Biology. - Amarnath Gupta; Michael Baitaluk; Animesh Ray; Aditya Bagchi (PReMI, 2009)

Semantic integration of data on transcriptional regulation. - Michael Baitaluk; Julia V. Ponomarenko (Bioinform., 2010)

BiologicalNetworks 2.0 - an integrative view of genome biology data. - Sergey Kozhenkov; Yulia Dubinina; Mayya Sedova; Amarnath Gupta; Julia V. Ponomarenko; Michael Baitaluk (BMC Bioinform., 2010)

BiologicalNetworks - tools enabling the integration of multi-scale data for the host-pathogen studies. - Sergey Kozhenkov; Mayya Sedova; Yulia Dubinina; Amarnath Gupta; Animesh Ray; Julia V. Ponomarenko; Michael Baitaluk (BMC Syst. Biol., 2011)

Mining and integration of pathway diagrams from imaging data. - Sergey Kozhenkov; Michael Baitaluk (Bioinform., 2012)

BindingDB in 2015: A public database for medicinal chemistry, computational chemistry and systems pharmacology. - Michael K. Gilson; Tiqing Liu; Michael Baitaluk; George Nicola; Linda Hwang; Jenny Chong (Nucleic Acids Res., 2016)