Progenetix.net: an online repository for molecular cytogenetic aberration data. - Michael Baudis; Michael L. Cleary (Bioinform., 2001)

Distance-based clustering of CGH data. - Jun Liu; Jaaved Mohammed; James Carter; Sanjay Ranka; Tamer Kahveci; Michael Baudis (Bioinform., 2006)

Quantifying cancer progression with conjunctive Bayesian networks. - Moritz Gerstung; Michael Baudis; Holger Moch; Niko Beerenwinkel (Bioinform., 2009)

Inferring progression models for CGH data. - Jun Liu; Nirmalya Bandyopadhyay; Sanjay Ranka; Michael Baudis; Tamer Kahveci (Bioinform., 2009)

Chromothripsis-like patterns are recurring, but heterogeneously distributed features in cancer: A survey of 22, 347 genomic copy number profiles. - Haoyang Cai; Nitin Kumar 004; Homayoun C. Bagheri; Christian von Mering; Mark D. Robinson; Michael Baudis (IWBBIO, 2013)

Progenetix: 12 years of oncogenomic data curation. - Haoyang Cai; Nitin Kumar 004; Ni Ai; Saumya Gupta; Prisni Rath; Michael Baudis (Nucleic Acids Res., 2014)

arrayMap 2014: an updated cancer genome resource. - Haoyang Cai; Saumya Gupta; Prisni Rath; Ni Ai; Michael Baudis (Nucleic Acids Res., 2015)

segment_liftover : a Python tool to convert segments between genome assemblies. - Bo Gao; Qingyao Huang; Michael Baudis (F1000Research, 2018)

Geographic assessment of cancer genome profiling studies. - Paula Carrio-Cordo; Elise Acheson; Qingyao Huang; Michael Baudis (Database J. Biol. Databases Curation, 2020)

The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research. - David Salgado; Irina M. Armean; Michael Baudis; Sergi Beltran; Salvador Capella-Gutiérrez; Denise Carvalho-Silva; Victoria Dominguez Del Angel; Joaquín Dopazo; Laura I. Furlong; Bo Gao; Leyla Jael García Castro; Dietlind Gerloff; et al. (F1000Research, 2020)

The Progenetix oncogenomic resource in 2021. - Qingyao Huang; Paula Carrio-Cordo; Bo Gao; Rahel Paloots; Michael Baudis (Database J. Biol. Databases Curation, 2021)

Data-Driven Information Extraction and Enrichment of Molecular Profiling Data for Cancer Cell Lines. - Ellery Smith; Rahel Paloots; Dimitris Giagkos; Michael Baudis; Kurt Stockinger (CoRR, 2023)

Twelve quick tips for deploying a Beacon. - Lauren A. Fromont; Mauricio Moldes; Michael Baudis; Anthony J. Brookes; Arcadi Navarro; Jordi Rambla (PLoS Comput. Biol., 2024)

labelSeg: segment annotation for tumor copy number alteration profiles. - Hangjia Zhao; Michael Baudis (Briefings Bioinform., 2024)

cancercelllines.org - a novel resource for genomic variants in cancer cell lines. - Rahel Paloots; Michael Baudis (Database J. Biol. Databases Curation, 2024)

Multicancer analyses of short tandem repeat variations reveal shared gene regulatory mechanisms. - Feifei Xia; Max A. Verbiest; Oxana Lundström; Tugce Bilgin Sonay; Michael Baudis; Maria Anisimova (Briefings Bioinform., 2025)