High-Resolution Modeling of Cellular Signaling Networks. - Michael Baym; Chris Bakal; Norbert Perrimon; Bonnie Berger (RECOMB, 2008)

IsoRankN: spectral methods for global alignment of multiple protein networks. - Chung-Shou Liao; Kanghao Lu; Michael Baym; Rohit Singh 001; Bonnie Berger (Bioinform., 2009)

IsoBase: a database of functionally related proteins across PPI networks. - Daniel Park; Rohit Singh 001; Michael Baym; Chung-Shou Liao; Bonnie Berger (Nucleic Acids Res., 2011)

Compressive genomics for protein databases. - Noah M. Daniels; Andrew Gallant; Jian Peng 001; Lenore J. Cowen; Michael Baym; Bonnie Berger (Bioinform., 2013)

Bounds on the k-dimension of Products of Special Posets. - Michael Baym; Douglas B. West (Order, 2013)