PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays. - Michael Beckstette; Dirk Strothmann; Robert Homann; Robert Giegerich; Stefan Kurtz (German Conference on Bioinformatics, 2004)

Genlight: An Interactive System for High-throughput Sequence Analysis and Comparative Genomics. - Michael Beckstette; Alexander Sczyrba; Paul M. Selzer (German Conference on Bioinformatics, 2004)

Genlight: Interactive high-throughput sequence analysis and comparative genomics. - Michael Beckstette; Jens T. Mailänder; Richard J. Marhöfer; Alexander Sczyrba; Enno Ohlebusch; Robert Giegerich; Paul M. Selzer (J. Integr. Bioinform., 2004)

Fast index based algorithms and software for matching position specific scoring matrices. - Michael Beckstette; Robert Homann; Robert Giegerich; Stefan Kurtz (BMC Bioinform., 2006)

Index-based algorithms for motif search and their integration in a system for differential genome analysis - Michael Beckstette (2007)

Significant speedup of database searches with HMMs by search space reduction with PSSM family models. - Michael Beckstette; Robert Homann; Robert Giegerich; Stefan Kurtz (Bioinform., 2009)

Lightweight comparison of RNAs based on exact sequence-structure matches. - Steffen Heyne; Sebastian Will; Michael Beckstette; Rolf Backofen (Bioinform., 2009)

Structator: fast index-based search for RNA sequence-structure patterns. - Fernando Meyer; Stefan Kurtz; Rolf Backofen; Sebastian Will; Michael Beckstette (BMC Bioinform., 2011)

CASSys: an integrated software-system for the interactive analysis of ChIP-seq data. - Malik Alawi; Stefan Kurtz; Michael Beckstette (J. Integr. Bioinform., 2011)

Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns. - Fernando Meyer; Stefan Kurtz; Michael Beckstette (BMC Bioinform., 2013)