LocTree3 prediction of localization. - Tatyana Goldberg; Maximilian Hecht; Tobias Hamp; Timothy Karl; Guy Yachdav; Nadeem Ahmed; Uwe Altermann; Philipp Angerer; Sonja Ansorge; Kinga Balasz; Michael Bernhofer; Alexander Betz; et al. (Nucleic Acids Res., 2014)

PredictProtein - an open resource for online prediction of protein structural and functional features. - Guy Yachdav; Edda Kloppmann; László Kaján; Maximilian Hecht; Tatyana Goldberg; Tobias Hamp; Peter Hönigschmid; Andrea Schafferhans; Manfred Roos; Michael Bernhofer; Lothar Richter; Haim Ashkenazy; et al. (Nucleic Acids Res., 2014)

Correcting mistakes in predicting distributions. - Valérie Marot-Lassauzaie; Michael Bernhofer; Burkhard Rost (Bioinform., 2018)

NLSdb - major update for database of nuclear localization signals and nuclear export signals. - Michael Bernhofer; Tatyana Goldberg; Silvana Wolf; Mohamed Ahmed; Julian Zaugg; Mikael Bodén; Burkhard Rost (Nucleic Acids Res., 2018)

PredictProtein - Predicting Protein Structure and Function for 29 Years. - Michael Bernhofer; Christian Dallago; Timothy Karl; Venkata P. Satagopam; Michael Heinzinger; Maria Littmann; Tobias Olenyi; Jiajun Qiu; Konstantin Schütze; Guy Yachdav; Haim Ashkenazy; Nir Ben-Tal; et al. (Nucleic Acids Res., 2021)

TMbed: transmembrane proteins predicted through language model embeddings. - Michael Bernhofer; Burkhard Rost (BMC Bioinform., 2022)

CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. - Alessio Del Conte; Adel Bouhraoua; Mahta Mehdiabadi; Damiano Clementel; Alexander Miguel Monzon; Alex S. Holehouse; Daniel A. Griffith; Ryan J. Emenecker; Ashwini Patil; Ronesh Sharma; Tatsuhiko Tsunoda; Alok Sharma; et al. (Nucleic Acids Res., 2023)