DRYGIN: a database of quantitative genetic interaction networks in yeast. - Judice L. Y. Koh; Huiming Ding; Michael Costanzo; Anastasia Baryshnikova; Kiana Toufighi; Gary D. Bader; Chad L. Myers; Brenda J. Andrews; Charles Boone (Nucleic Acids Res., 2010)

Clustering with Overlap for Genetic Interaction Networks via Local Search Optimization. - Joseph Andrew Whitney; Judice L. Y. Koh; Michael Costanzo; Grant Brown; Charles Boone; Michael Brudno (WABI, 2011)

Protein Complexes are Central in the Yeast Genetic Landscape. - Magali Michaut; Anastasia Baryshnikova; Michael Costanzo; Chad L. Myers; Brenda J. Andrews; Charles Boone; Gary D. Bader (PLoS Comput. Biol., 2011)

Network Evolution: Rewiring and Signatures of Conservation in Signaling. - Mark G. F. Sun; Martin Sikora; Michael Costanzo; Charles Boone; Philip M. Kim (PLoS Comput. Biol., 2012)

SGAtools: one-stop analysis and visualization of array-based genetic interaction screens. - Omar Wagih; Matej Usaj; Anastasia Baryshnikova; Benjamin VanderSluis; Elena Kuzmin; Michael Costanzo; Chad L. Myers; Brenda J. Andrews; Charles Boone; Leopold Parts (Nucleic Acids Res., 2013)

Predicting bioprocess targets of chemical compounds through integration of chemical-genetic and genetic interactions. - Scott W. Simpkins; Justin Nelson; Raamesh Deshpande; Sheena C. Li; Jeff S. Piotrowski; Erin H. Wilson; Abraham A. Gebre; Hamid Safizadeh; Reika Okamoto; Mami Yoshimura; Michael Costanzo; Yoko Yashiroda; et al. (PLoS Comput. Biol., 2018)