An efficient Bayesian inference framework for coalescent-based nonparametric phylodynamics. - Shiwei Lan; Julia A. Palacios; Michael D. Karcher; Vladimir N. Minin; Babak Shahbaba (Bioinform., 2015)

Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference. - Michael D. Karcher; Julia A. Palacios; Trevor Bedford; Marc A. Suchard; Vladimir N. Minin (PLoS Comput. Biol., 2016)

Estimating effective population size changes from preferentially sampled genetic sequences. - Michael D. Karcher; Luiz Max Carvalho; Marc A. Suchard; Gytis Dudas; Vladimir N. Minin (PLoS Comput. Biol., 2020)

Finding high posterior density phylogenies by systematically extending a directed acyclic graph. - Chris Jennings-Shaffer; David H. Rich; Matthew Macaulay; Michael D. Karcher; Tanvi Ganapathy; Shosuke Kiami; Anna Kooperberg; Cheng Zhang; Marc A. Suchard; Frederick A. Matsen IV (Algorithms Mol. Biol., 2025)