PatMaN: rapid alignment of short sequences to large databases. - Kay Prüfer; Udo Stenzel; Michael Dannemann; Richard E. Green; Michael Lachmann; Janet Kelso (Bioinform., 2008)

The effects of probe binding affinity differences on gene expression measurements and how to deal with them. - Michael Dannemann; Anna Lorenc; Ines Hellmann; Philipp Khaitovich; Michael Lachmann (Bioinform., 2009)

'maskBAD' - a package to detect and remove Affymetrix probes with binding affinity differences. - Michael Dannemann; Michael Lachmann; Anna Lorenc (BMC Bioinform., 2012)

ABAEnrichment: an R package to test for gene set expression enrichment in the adult and developing human brain. - Steffi Grote; Kay Prüfer; Janet Kelso; Michael Dannemann (Bioinform., 2016)