A knowledge based approach for representing and reasoning about signaling networks. - Chitta Baral; Karen Chancellor; Tran Hoai Nam; Nhan Tran; Anna M. Joy; Michael E. Berens (ISMB/ECCB (Supplement of Bioinformatics), 2004)

Automated Characterization of cellular migration phenomena. - Christian Beaudry; Michael E. Berens; Tarek A. El Doker; Anna M. Joy; Lina J. Karam; Zoé Lacroix; Jad A. Lutfi; Sai Motoru (CSB Workshops, 2005)

Evolving Feature Selection. - Huan Liu 001; Edward R. Dougherty; Jennifer G. Dy; Kari Torkkola; Eugene Tuv; Hanchuan Peng; Chris H. Q. Ding; Fuhui Long; Michael E. Berens; Lance Parsons; Zheng Zhao 002; Lei Yu 001; et al. (IEEE Intell. Syst., 2005)

Migration and Proliferation Analysis for Bladder Cancer Cells. - Asaad F. Said; Lina J. Karam; Michael E. Berens; Zoé Lacroix; Rosemary A. Renaut (ISBI, 2007)

Specification, annotation, visualization and simulation of a large rule-based model for ERBB receptor signaling. - Matthew S. Creamer; Edward C. Stites; Meraj Aziz; James A. Cahill; Chin Wee Tan; Michael E. Berens; Haiyong Han; Kimberly J. Bussey; Daniel D. Von Hoff; William S. Hlavacek; Richard G. Posner (BMC Syst. Biol., 2012)

Stable Gene Selection from Microarray Data via Sample Weighting. - Lei Yu 001; Yue Han; Michael E. Berens (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Knowledge-Assisted Approach to Identify Pathways with Differential Dependencies. - Gil Speyer; Jeff Kiefer; Harshil Dhruv; Michael E. Berens; Seungchan Kim (PSB, 2016)

Differential Pathway Dependency Discovery Associated with Drug Response across Cancer Cell Lines. - Gil Speyer; Divya Mahendra; Hai J. Tran; Jeff Kiefer; Stuart L. Schreiber; Paul A. Clemons; Harshil Dhruv; Michael E. Berens; Seungchan Kim (PSB, 2017)

Probing glioblastoma and its microenvironment using single-nucleus and single-cell sequencing. - Sen Peng; Seungchan Kim; Harshil Dhruv; Sanhita Rath; Connor Vuong; Saumya Bollam; Jenny Eschbacher; Xishuang Dong; Shwetal Mehta; Nader Sanai; Michael E. Berens (BIBM, 2019)