SVDMAN-singular value decomposition analysis of microarray data. - Michael E. Wall; Patricia A. Dyck; Thomas S. Brettin (Bioinform., 2001)

Robustness in gene circuits: clustering of functional responses. - Mary J. Dunlop; Michael E. Wall (ACC, 2005)

Domain motions of Argonaute, the catalytic engine of RNA interference. - Dengming Ming; Michael E. Wall; Kevin Y. Sanbonmatsu (BMC Bioinform., 2007)

Model of Transcriptional Activation by MarA in Escherichia coli. - Michael E. Wall; David A. Markowitz; Judah L. Rosner; Robert G. Martin (PLoS Comput. Biol., 2009)

Pattern Learning through Distant Supervision for Extraction of Protein-Residue Associations in the Biomedical Literature. - K. E. Ravikumar; Haibin Liu; Judith D. Cohn; Michael E. Wall; Karin Verspoor (ICMLA (2), 2011)

Genome Majority Vote Improves Gene Predictions. - Michael E. Wall; Sindhu Raghavan; Judith D. Cohn; John Dunbar (PLoS Comput. Biol., 2011)

Literature mining of protein-residue associations with graph rules learned through distant supervision. - K. E. Ravikumar; Haibin Liu; Judith D. Cohn; Michael E. Wall; Karin Verspoor (J. Biomed. Semant., 2012)

Detection of Protein Catalytic Sites in the Biomedical Literature. - Karin Verspoor; Andrew MacKinlay; Judith D. Cohn; Michael E. Wall (Pacific Symposium on Biocomputing, 2013)

Scaling molecular dynamics beyond 100, 000 processor cores for large-scale biophysical simulations. - Jaewoon Jung; Wataru Nishima; Marcus Daniels; Gavin Bascom; Chigusa Kobayashi; Adetokunbo Adedoyin; Michael E. Wall; Anna Lappala; Dominic Phillips; William Fischer 001; Chang-Shung Tung; Tamar Schlick; et al. (J. Comput. Chem., 2019)

Performance Optimizations of Recursive Electronic Structure Solvers targeting Multi-Core Architectures (LA-UR-20-26665). - Adetokunbo Adedoyin; Christian F. A. Negre; Jamaludin Mohd-Yusof; Nicolas Bock; Daniel Osei-Kuffuor; Jean-Luc Fattebert; Michael E. Wall; Anders M. N. Niklasson; Susan M. Mniszewski (CoRR, 2021)

Enabling particle applications for exascale computing platforms. - Susan M. Mniszewski; James F. Belak; Jean-Luc Fattebert; Christian F. A. Negre; Stuart R. Slattery; Adetokunbo A. Adedoyin; Robert F. Bird; Choong-Seock Chang; Guangye Chen; Stéphane Ethier; Shane Fogerty; Salman Habib 002; et al. (Int. J. High Perform. Comput. Appl., 2021)

Accelerating x-ray tracing for exascale systems using Kokkos. - Felix Wittwer; Nicholas K. Sauter; Derek Mendez; Billy K. Poon; Aaron S. Brewster; James M. Holton; Michael E. Wall; William E. Hart; Deborah Bard; Johannes P. Blaschke (Concurr. Comput. Pract. Exp., 2024)

Co-design for Particle Applications at Exascale. - Samuel Temple Reeve; Jean-Luc Fattebert; Stephen Dewitt; Pablo Seleson; David Joy; Stuart R. Slattery; Aaron Scheinberg; Rene Halver; Christoph Junghans; Christian F. A. Negre; Michael E. Wall; Yu Zhang 010; et al. (Comput. Sci. Eng., 2024)

GPU-Accelerated Charge-Equilibration for Shadow Molecular Dynamics in Python. - Mehmet Cagri Kaymak; Nicholas Lubbers; Christian F. A. Negre; Michael E. Wall; Anders M. N. Niklasson (CoRR, 2025)