The design of Macaulay: a system for computing in algebraic geometry and commutative algebra. - David Bayer; Michael Eugene Stillman (SYMSAC, 1986)

On the Complexity of Computing Syzygies. - David Bayer; Michael Eugene Stillman (J. Symb. Comput., 1988)

Computation of Hilbert Functions. - David Bayer; Michael Eugene Stillman (J. Symb. Comput., 1992)

Strategies for Computing Minimal Free Resolutions. - Roberto La Scala; Michael Eugene Stillman (J. Symb. Comput., 1998)

Cohomology on Toric Varieties and Local Cohomology with Monomial Supports. - David Eisenbud; Mircea Mustala; Michael Eugene Stillman (J. Symb. Comput., 2000)

Computing in algebraic geometry and commutative algebra using Macaulay 2. - Michael Eugene Stillman (J. Symb. Comput., 2003)

Algebraic geometry of Bayesian networks. - Luis David García-Puente; Michael Eugene Stillman; Bernd Sturmfels (J. Symb. Comput., 2005)

Reverse-engineering of polynomial dynamical systems. - Abdul Salam Jarrah; Reinhard C. Laubenbacher; Brandilyn Stigler; Michael Eugene Stillman (Adv. Appl. Math., 2007)

On the geometry of parametrized bicubic surfaces. - André Galligo; Michael Eugene Stillman (J. Symb. Comput., 2007)

Parameter estimation for Boolean models of biological networks. - Elena S. Dimitrova; Luis David García-Puente; Franziska Hinkelmann; Abdul Salam Jarrah; Reinhard C. Laubenbacher; Brandilyn Stigler; Michael Eugene Stillman; Paola Vera-Licona (Theor. Comput. Sci., 2011)

Practical Gröbner basis computation. - Bjarke Hammersholt Roune; Michael Eugene Stillman (ISSAC, 2012)

Practical Groebner Basis Computation. - Bjarke Hammersholt Roune; Michael Eugene Stillman (CoRR, 2012)

A counter-example to the Schenck-Stiller "2r + 1" conjecture. - Beihui Yuan; Michael Eugene Stillman (Adv. Appl. Math., 2019)

Singular Value Decomposition of Complexes. - Danielle A. Brake; Jonathan D. Hauenstein; Frank-Olaf Schreyer; Andrew J. Sommese; Michael Eugene Stillman (SIAM J. Appl. Algebra Geom., 2019)

Learning Selection Strategies in Buchberger's Algorithm. - Dylan Peifer; Michael Eugene Stillman; Daniel Halpern-Leistner (ICML, 2020)

MSSM: A Macaulay2 Package for the Vacuum Moduli Space. - Yang-Hui He; Vishnu Jejjala; Brent D. Nelson; Hal Schenck; Michael Eugene Stillman (ACM Commun. Comput. Algebra, 2023)

Cyclone: open-source package for simulation and analysis of finite dynamical systems. - Elena S. Dimitrova; Adam C. Knapp; Brandilyn Stigler; Michael Eugene Stillman (Bioinform., 2023)