Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments. - Anthony A. Philippakis; Aaron M. Qureshi; Michael F. Berger; Martha L. Bulyk (J. Comput. Biol., 2008)

Predicting the binding preference of transcription factors to individual DNA k-mers. - Trevis M. Alleyne; Lourdes Peña Castillo; Gwenael Badis; Shaheynoor Talukder; Michael F. Berger; Andrew R. Gehrke; Anthony A. Philippakis; Martha L. Bulyk; Quaid Morris; Timothy R. Hughes (Bioinform., 2009)

PRADA: pipeline for RNA sequencing data analysis. - Wandaliz Torres-García; Siyuan Zheng; Andrey Sivachenko; Rahulsimham Vegesna; Qianghu Wang; Rong Yao; Michael F. Berger; John N. Weinstein; Gad Getz; Roel G. W. Verhaak (Bioinform., 2014)

MPath - Results Manager, a comprehensive solution to store, review and manage genomic variants from NGS-based clinical tests. - Aijazuddin Syed; Anoop Balakrishnan; Aaron Dack; John Ziegler; Shruti H. Madur; Jack Birnbaum; Jason Hwee; Meera Prasad; Mustafa Syed; Mohammad Haque; Zhen Y. Liu; Sumit Middha; et al. (AMIA, 2018)