Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x. - Vincent J. Carey; Adam R. Davis; Michael F. Lawrence; Robert Gentleman; Benjamin A. Raby (Bioinform., 2009)

rtracklayer: an R package for interfacing with genome browsers. - Michael F. Lawrence; Robert Gentleman; Vincent J. Carey (Bioinform., 2009)

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. - Martin Morgan; Simon Anders; Michael F. Lawrence; Patrick Aboyoun; Hervé Pagès; Robert Gentleman (Bioinform., 2009)

Software for Computing and Annotating Genomic Ranges. - Michael F. Lawrence; Wolfgang Huber; Hervé Pagès; Patrick Aboyoun; Marc Carlson; Robert Gentleman; Martin T. Morgan; Vincent J. Carey (PLoS Comput. Biol., 2013)

VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants. - Valerie Obenchain; Michael F. Lawrence; Vincent J. Carey; Stephanie M. Gogarten; Paul Shannon; Martin Morgan (Bioinform., 2014)

Scalable Genomics with R and Bioconductor. - Michael F. Lawrence; Martin Morgan (CoRR, 2014)

SomaticSignatures: inferring mutational signatures from single-nucleotide variants. - Julian Gehring; Bernd Fischer 003; Michael F. Lawrence; Wolfgang Huber (Bioinform., 2015)

VariantTools: an extensible framework for developing and testing variant callers. - Michael F. Lawrence; Robert Gentleman (Bioinform., 2017)

SeqArray - a storage-efficient high-performance data format for WGS variant calls. - Xiuwen Zheng 001; Stephanie M. Gogarten; Michael F. Lawrence; Adrienne Stilp; Matthew P. Conomos; Bruce S. Weir; Cathy C. Laurie; David Levine (Bioinform., 2017)