Incorporating Dynamics in E. coli Dihydrofolate Reductase Enhances Structure-Based Drug Discovery. - Michael G. Lerner; Anna L. Bowman; Heather A. Carlson (J. Chem. Inf. Model., 2007)

Automated clustering of probe molecules from solvent mapping of protein surfaces: new algorithms applied to hot-spot mapping and structure-based drug design. - Michael G. Lerner; Kristin L. Meagher; Heather A. Carlson (J. Comput. Aided Mol. Des., 2008)

Web-Based Computational Chemistry Education with CHARMMing II: Coarse-Grained Protein Folding. - Frank C. Pickard IV; Benjamin T. Miller; Vinushka Schalk; Michael G. Lerner; H. Lee Woodcock III; Bernard R. Brooks (PLoS Comput. Biol., 2014)

Prioritizing drug targets by perturbing biological network response functions. - Matthew C. Perrone; Michael G. Lerner; Matthew Dunworth; Andrew J. Ewald; Joel S. Bader (PLoS Comput. Biol., 2024)