Statistical Consistency of Coalescent-Based Species Tree Methods Under Models of Missing Data. - Michael Nute; Jed Chou (RECOMB-CG, 2017)

Long-branch attraction in species tree estimation: inconsistency of partitioned likelihood and topology-based summary methods. - Sebastien Roch; Michael Nute; Tandy J. Warnow (CoRR, 2018)

Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows. - Nidhi Shah; Michael G. Nute; Tandy J. Warnow; Mihai Pop (Bioinform., 2019)

Accelerating SARS-CoV-2 low frequency variant calling on ultra deep sequencing datasets. - Bryce Kille; Yunxi Liu; Nicolae Sapoval; Michael Nute; Lawrence Rauchwerger; Nancy M. Amato; Todd J. Treangen (IPDPS Workshops, 2021)

SeqScreen-Nano: a computational platform for streaming, in-field characterization of microbial pathogens. - Advait Balaji; Yunxi Liu; Michael G. Nute; Bingbing Hu; Anthony D. Kappell; Danielle S. Lesassier; Gene D. Godbold; Krista Ternus; Todd J. Treangen (BCB, 2023)

Bakdrive: identifying a minimum set of bacterial species driving interactions across multiple microbial communities. - Qi Wang 038; Michael Nute; Todd J. Treangen (Bioinform., 2023)