The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression. - Michael Gribskov; J. Devereux; Richard R. Burgess (Nucleic Acids Res., 1984)

PEPPLOT, a protein secondary structure analysis program for the UWGCG sequence analysis software package. - Michael Gribskov; Richard R. Burgess; J. Devereux (Nucleic Acids Res., 1986)

Profile scanning for three-dimensional structural patterns in protein sequences. - Michael Gribskov; M. Homyak; J. Edenfield; David S. Eisenberg (Comput. Appl. Biosci., 1988)

The Language Metaphor in Sequence Analysis. - Michael Gribskov (Comput. Chem., 1992)

A Mechanistic View of Proteins and Their Sequences. - Michael Gribskov (Comput. Chem., 1993)

The Megaprior Heuristic for Discovering Protein Sequence Patterns. - Timothy L. Bailey; Michael Gribskov (ISMB, 1996)

Use of Receiver Operating Characteristic (ROC) Analysis to Evaluate Sequence Matching. - Michael Gribskov; Nina L. Robinson (Comput. Chem., 1996)

Score Distributions for Simultaneous Matching to Multiple Motifs. - Timothy L. Bailey; Michael Gribskov (J. Comput. Biol., 1997)

Combining evidence using p-values: application to sequence homology searches. - Timothy L. Bailey; Michael Gribskov (Bioinform., 1998)

Methods and Statistics for Combining Motif Match Scores. - Timothy L. Bailey; Michael Gribskov (J. Comput. Biol., 1998)

Concerning the accuracy of MAST E-values. - Timothy L. Bailey; Michael Gribskov (Bioinform., 2000)

ISMB-2000: Bioinformatics enters a new millennium. - Philip E. Bourne; Michael Gribskov (Bioinform., 2000)

Use of keyword hierarchies to interpret gene expression patterns. - Daniel R. Masys; John B. Welsh; J. Lynn Fink; Michael Gribskov; Igor Klacansky; Jacques Corbeil (Bioinform., 2001)

PlantsP: a functional genomics database for plant phosphorylation. - Michael Gribskov; Fariba Fana; Jeffrey Harper; Debra A. Hope; Alice C. Harmon; Douglas W. Smith; Frans E. Tax; Guangfa Zhang (Nucleic Acids Res., 2001)

Homophila: human disease gene cognates in Drosophila. - Samson Chien; Lawrence T. Reiter; Ethan Bier; Michael Gribskov (Nucleic Acids Res., 2002)

2HAPI: A Microarray Data Analysis System. - J. Lynn Fink; Scott Drewes; Hiren Patel; John B. Welsh; Daniel R. Masys; Jacques Corbeil; Michael Gribskov (Bioinform., 2003)

Rival penalized competitive learning (RPCL): a topology-determining algorithm for analyzing gene expression data. - T. Murlidharan Nair; Christina L. Zheng; J. Lynn Fink; Robert O. Stuart; Michael Gribskov (Comput. Biol. Chem., 2003)

a program for automatic generation of database interfaces . - Christina L. Zheng; Fariba Fana; Poornaprajna V. Udupi; Michael Gribskov (Comput. Biol. Chem., 2003)

Estimating and Evaluating the Statistics of Gapped Local-Alignment Scores. - Timothy L. Bailey; Michael Gribskov (J. Comput. Biol., 2003)

The PlantsP and PlantsT Functional Genomics Databases. - Jason H. Tchieu; Fariba Fana; J. Lynn Fink; Jeffrey Harper; T. Murlidharan Nair; R. Hannes Niedner; Douglas W. Smith; Kenneth Steube; Tobey M. Tam; Stella Veretnik; Degeng Wang; Michael Gribskov (Nucleic Acids Res., 2003)

Challenges in Data Management for Functional Genomics. - Michael Gribskov (OMICS, 2003)

A Database Designed to Computationally Aid an Experimental Approach to Alternative Splicing. - Christina L. Zheng; T. Murlidharan Nair; Michael Gribskov; Y. S. Kwon; Hai-Ri Li; Xiang-Dong Fu (Pacific Symposium on Biocomputing, 2004)

An Open Forum for Computational Biology. - Michael Gribskov (PLoS Comput. Biol., 2005)

The ISCB: Growing and Evolving in Step with Science. - Michael Gribskov (PLoS Comput. Biol., 2005)

Establishing bioinformatics research in the Asia Pacific. - Shoba Ranganathan; Martti Tammi; Michael Gribskov; Tin Wee Tan (BMC Bioinform., 2006)

Wiggle - Predicting Functionally Flexible Regions from Primary Sequence. - Jenny Gu; Michael Gribskov; Philip E. Bourne (PLoS Comput. Biol., 2006)

Pattern Matching in RNA Structures. - Kejie Li; Reazur Rahman; Aditi Gupta 001; Prasad Siddavatam; Michael Gribskov (ISBRA, 2008)

Bioinformatics research in the Asia Pacific: a 2007 update. - Shoba Ranganathan; Michael Gribskov; Tin Wee Tan (BMC Bioinform., 2008)

Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera). - Gladys K. Andino; Michael Gribskov; Greg J. Hunt; Denis Anderson; Jay D. Evans (BIBM, 2015)

MMC-margin: Identification of maximum frequent subgraphs by metropolis Monte Carlo sampling. - Muyi Liu; Michael Gribskov (IEEE BigData, 2015)

Differential flux balance analysis of quantitative proteomic data on protein interaction networks. - Biaobin Jiang; David F. Gleich; Michael Gribskov (GlobalSIP, 2015)

GenoBase: comprehensive resource database of Escherichia coli K-12. - Yuta Otsuka; Ai Muto; Rikiya Takeuchi; Chihiro Okada; Motokazu Ishikawa; Koichiro Nakamura; Natsuko Yamamoto; Hitomi Dose; Kenji Nakahigashi; Shigeki Tanishima; Sivasundaram Suharnan; Wataru Nomura; et al. (Nucleic Acids Res., 2015)

CellMiner Companion: an interactive web application to explore CellMiner NCI-60 data. - Sufang Wang; Michael Gribskov; Tony R. Hazbun; Pete E. Pascuzzi (Bioinform., 2016)

Advancing the Representation of Women in HPC at Purdue University. - Gladys K. Andino; Marisa Brazil; Michael Gribskov; Preston M. Smith (PEARC, 2017)

AptRank: an adaptive PageRank model for protein function prediction on bi-relational graphs. - Biaobin Jiang; Kyle Kloster; David F. Gleich; Michael Gribskov (Bioinform., 2017)

DEIsoM: a hierarchical Bayesian model for identifying differentially expressed isoforms using biological replicates. - Hao Peng; Yifan Yang; Shandian Zhe; Jian Wang; Michael Gribskov; Yuan Qi 001 (Bioinform., 2017)

Comprehensive evaluation of de novo transcriptome assembly programs and their effects on differential gene expression analysis. - Sufang Wang; Michael Gribskov (Bioinform., 2017)

AUDIT: approving and tracking updates with dependencies in collaborative databases. - Khaleel Mershad 001; Qutaibah M. Malluhi; Mourad Ouzzani; MingJie Tang; Michael Gribskov; Walid G. Aref (Distributed Parallel Databases, 2018)

COACT: a query interface language for collaborative databases. - Khaleel Mershad 001; Qutaibah M. Malluhi; Mourad Ouzzani; MingJie Tang; Michael Gribskov; Walid G. Aref; Deo Prakash (Distributed Parallel Databases, 2018)

IRESpy: an XGBoost model for prediction of internal ribosome entry sites. - Junhui Wang; Michael Gribskov (BMC Bioinform., 2019)

MiPepid: MicroPeptide identification tool using machine learning. - Mengmeng Zhu; Michael Gribskov (BMC Bioinform., 2019)

Identification of Sequence Patterns, Motifs and Domains. - Michael Gribskov (Encyclopedia of Bioinformatics and Computational Biology (3), 2019)

MicroRNA and lncRNA Databases and Analysis. - Xiangying Sun; Michael Gribskov (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq. - Xiangying Sun; Zhezhen Wang; Johnathon M. Hall; Carlos Perez-Cervantes; Alexander J. Ruthenburg; Ivan P. Moskowitz; Michael Gribskov; Xinan Holly Yang (PLoS Comput. Biol., 2020)

Bibliometric review of ATAC-Seq and its application in gene expression. - Liheng Luo; Michael Gribskov; Sufang Wang (Briefings Bioinform., 2022)