Spherical Topic Models for Imaging Phenotype Discovery in Genetic Studies. - Kayhan N. Batmanghelich; Michael H. Cho; Raúl San José Estépar; Polina Golland (BAMBI, 2014)

Dual beta process priors for latent cluster discovery in chronic obstructive pulmonary disease. - James C. Ross; Peter J. Castaldi; Michael H. Cho; Jennifer G. Dy (KDD, 2014)

On the simultaneous association analysis of large genomic regions: a massive multi-locus association test. - Dandi Qiao; Michael H. Cho; Heide Loehlein Fier; Per S. Bakke; Amund Gulsvik; Edwin K. Silverman; Christoph Lange 003 (Bioinform., 2014)

Analyzing networks of phenotypes in complex diseases: methodology and applications in COPD. - Jen-hwa Chu; Craig P. Hersh; Peter J. Castaldi; Michael H. Cho; Benjamin A. Raby; Nan M. Laird; Russell Bowler; Stephen I. Rennard; Joseph Loscalzo; John Quackenbush; Edwin K. Silverman (BMC Syst. Biol., 2014)

A diVIsive Shuffling Approach (VIStA) for gene expression analysis to identify subtypes in Chronic Obstructive Pulmonary Disease. - Jörg Menche; Amitabh Sharma; Michael H. Cho; Ruth J. Mayer; Stephen I. Rennard; Bartolome Celli; Bruce E. Miller; Nick Locantore; Ruth Tal-Singer; Soumitra Ghosh; Chris Larminie; Glyn Bradley; et al. (BMC Syst. Biol., 2014)

Generative Method to Discover Genetically Driven Image Biomarkers. - Nematollah Kayhan Batmanghelich; Ardavan Saeedi; Michael H. Cho; Raúl San José Estépar; Polina Golland (IPMI, 2015)

Interpretable Clustering via Discriminative Rectangle Mixture Model. - Junxiang Chen; Yale Chang; Brian D. Hobbs; Peter J. Castaldi; Michael H. Cho; Edwin K. Silverman; Jennifer G. Dy (ICDM, 2016)

Inferring Disease Status by Non-parametric Probabilistic Embedding. - Nematollah Kayhan Batmanghelich; Ardavan Saeedi; Raúl San José Estépar; Michael H. Cho; William M. Wells III (MCV/BAMBI@MICCAI, 2016)

Clustering from Multiple Uncertain Experts. - Yale Chang; Junxiang Chen; Michael H. Cho; Peter J. Castaldi; Edwin K. Silverman; Jennifer G. Dy (AISTATS, 2017)

Multiple Clustering Views from Multiple Uncertain Experts. - Yale Chang; Junxiang Chen; Michael H. Cho; Peter J. Castaldi; Edwin K. Silverman; Jennifer G. Dy (ICML, 2017)

A Likelihood-Free Approach for Characterizing Heterogeneous Diseases in Large-Scale Studies. - Jenna Schabdach; William M. Wells III; Michael H. Cho; Kayhan N. Batmanghelich (IPMI, 2017)

Clustering with Domain-Specific Usefulness Scores. - Yale Chang; Junxiang Chen; Michael H. Cho; Peter J. Castaldi; Edwin K. Silverman; Jennifer G. Dy (SDM, 2017)

A Bayesian Nonparametric Model for Disease Subtyping: Application to Emphysema Phenotypes. - James C. Ross; Peter J. Castaldi; Michael H. Cho; Junxiang Chen; Yale Chang; Jennifer G. Dy; Edwin K. Silverman; George R. Washko; Raúl San José Estépar (IEEE Trans. Medical Imaging, 2017)

Crowdclustering with Partition Labels. - Junxiang Chen; Yale Chang; Peter J. Castaldi; Michael H. Cho; Brian D. Hobbs; Jennifer G. Dy (AISTATS, 2018)

A unifying framework for rare variant association testing in family-based designs, including higher criticism approaches, SKATs, and burden tests. - Julian Hecker; F. William Townes; Priyadarshini Kachroo; Cecelia A. Laurie; Jessica Lasky-Su; John Ziniti; Michael H. Cho; Scott T. Weiss; Nan M. Laird; Christoph Lange 003 (Bioinform., 2021)

Improved prediction of smoking status via isoform-aware RNA-seq deep learning models. - Zifeng Wang 002; Aria Masoomi; Zhonghui Xu; Adel Boueiz; Sool Lee; Tingting Zhao; Russell Bowler; Michael H. Cho; Edwin K. Silverman; Craig P. Hersh; Jennifer G. Dy; Peter J. Castaldi (PLoS Comput. Biol., 2021)

A fast and efficient smoothing approach to Lasso regression and an application in statistical genetics: polygenic risk scores for chronic obstructive pulmonary disease (COPD). - Georg Hahn; Sharon Marie Lutz; Nilanjana Laha; Michael H. Cho; Edwin K. Silverman; Christoph Lange 003 (Stat. Comput., 2021)

Unsupervised outlier detection applied to SARS-CoV-2 nucleotide sequences can identify sequences of common variants and other variants of interest. - Georg Hahn; Sanghun Lee; Dmitry Prokopenko; Jonathan Abraham; Tanya Novak; Julian Hecker; Michael H. Cho; Surender Khurana; Lindsey R. Baden; Adrienne G. Randolph; Scott T. Weiss; Christoph Lange 003 (BMC Bioinform., 2022)

Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals. - Michele Gentili; Kimberly Glass; Enrico Maiorino; Brian D. Hobbs; Zhonghui Xu; Peter J. Castaldi; Michael H. Cho; Craig P. Hersh; Dandi Qiao; Jarrett D. Morrow; Vincent J. Carey; John Platig; et al. (PLoS Comput. Biol., 2024)

Fast computation of the eigensystem of genomic similarity matrices. - Georg Hahn; Sharon Marie Lutz; Julian Hecker; Dmitry Prokopenko; Michael H. Cho; Edwin K. Silverman; Scott T. Weiss; Christoph Lange 003 (BMC Bioinform., 2024)

A statistical framework for multi-trait rare variant analysis in large-scale whole-genome sequencing studies. - Xihao Li; Han Chen; Margaret Sunitha Selvaraj; Eric Van Buren; Hufeng Zhou; Yuxuan Wang 008; Ryan Sun; Zachary R. McCaw; Zhi Yu; Min-Zhi Jiang; Daniel DiCorpo; Sheila M. Gaynor; et al. (Nat. Comput. Sci., 2025)