Interactive visualization and manipulation of 3-D reconstructions for the planning of surgical procedures. - Ron Kikinis; Harvey E. Cline; David Altobelli; Michael W. Halle; William E. Lorensen; Ferenc A. Jolesz (VBC, 1992)

Image Guided Microscopic Surgery System Using Mutual-Information Based Registraion. - Nobuhiko Hata; William M. Wells III; Michael Halle; Shin Nakajima 002; Paul A. Viola; Ron Kikinis; Ferenc A. Jolesz (VBC, 1996)

AnatomyBrowser: A Framework for Integration of Medical Information. - Polina Golland; Ron Kikinis; Christopher Umans; Michael Halle; Martha Elizabeth Shenton; Jens A. Richolt (MICCAI, 1998)

Multiple Viewpoint Rendering. - Michael Halle (SIGGRAPH, 1998)

Fast re-rendering of volume and surface graphics by depth, color, and opacity buffering. - Abhir Bhalerao; Hanspeter Pfister; Michael Halle; Ron Kikinis (Medical Image Anal., 2000)

Conformal Surface Parameterization for Texture Mapping. - Steven Haker; Sigurd B. Angenent; Allen R. Tannenbaum; Ron Kikinis; Guillermo Sapiro; Michael Halle (IEEE Trans. Vis. Comput. Graph., 2000)

Physics-Based Subdivision Surface Modeling for Medical Imaging and Simulation. - Kaihuai Qin; Huawei Wang; Denggao Li; Ron Kikinis; Michael Halle (MIAR, 2001)

LightKit: A lighting system for effective visualization. - Michael Halle; Jeanette C. Meng (IEEE Visualization, 2003)

Holographic Video Display of Time-Series Volumetric Medical Data. - Wendy Plesniak; Michael Halle; Steven D. Pieper; William M. Wells III; Marianna Jakab; Dominik S. Meier; Stephen A. Benton; Charles R. G. Guttmann; Ron Kikinis (IEEE Visualization, 2003)

Using a 2D colon to guide 3D navigation in virtual colonoscopy. - Jeanette C. Meng; Michael Halle (APGV, 2004)

3D Slicer. - Stephen D. Pieper; Michael Halle; Ron Kikinis (ISBI, 2004)

Flexible frameworks for medical multimedia. - Michael Halle; Ron Kikinis (ACM Multimedia, 2004)

Holography and holographic stereograms plus computation and bandlimiting for discrete parallax displays. - Michael Halle (SIGGRAPH Courses, 2005)

Autostereoscopic displays and computer graphics. - Michael Halle (SIGGRAPH Courses, 2005)

Three-dimensional displays and computer graphics. - Michael Halle; Joshua Napoli; Wendy Plesniak (SIGGRAPH Courses, 2005)

Computed holograms and holographic video display of 3D data. - Wendy Plesniak; Michael Halle (SIGGRAPH Courses, 2005)

3-D Displays and Signal Processing. - Janusz Konrad; Michael Halle (IEEE Signal Process. Mag., 2007)

A prototype symbolic model of canonical functional neuroanatomy of the motor system. - Ion-Florin Talos; Daniel L. Rubin; Michael Halle; Mark A. Musen; Ron Kikinis (J. Biomed. Informatics, 2008)

Computational neuroanatomy: ontology-based representation of neural components and connectivity. - Daniel L. Rubin; Ion-Florin Talos; Michael Halle; Mark A. Musen; Ron Kikinis (BMC Bioinform., 2009)

Ontological Labels for Automated Location of Left Ventricular Remodeling. - Shane Steinert-Threlkeld; Siamak Ardekani; José L. V. Mejino Jr.; Landon Detwiler; James F. Brinkley; Michael Halle; Ron Kikinis; Raimond L. Winslow; Michael I. Miller; J. Tilak Ratnanather (ICSC, 2011)

Ontological labels for automated location of anatomical shape differences. - Shane Steinert-Threlkeld; Siamak Ardekani; José L. V. Mejino Jr.; Landon Detwiler; James F. Brinkley; Michael Halle; Ron Kikinis; Raimond L. Winslow; Michael I. Miller; J. Tilak Ratnanather (J. Biomed. Informatics, 2012)

Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience. - Tina Kapur; Steve Pieper 001; Andriy Fedorov; Jean-Christophe Fillion-Robin; Michael Halle; Lauren O'Donnell; Andras Lasso; Tamas Ungi; Csaba Pinter; Julien Finet; Sonia Pujol; Jagadeesan Jayender; et al. (Medical Image Anal., 2016)

The Open Anatomy Browser: A Collaborative Web-Based Viewer for Interoperable Anatomy Atlases. - Michael Halle; Valentin Demeusy; Ron Kikinis (Frontiers Neuroinformatics, 2017)

Affordable Custom Three-Dimensional Anatomy Atlases. - Nayra Pumar-Carreras; Carlos Luque; Michael Halle; Babacar Diao; Cheikh Tidiane Diop; Juan Ruiz-Alzola (GHTC, 2019)

MRI-based radiomic feature analysis of end-stage liver disease for severity stratification. - Jennifer Nitsch; Jordan Sack; Michael W. Halle; Jan Hendrik Moltz; April Wall; Anna E. Rutherford; Ron Kikinis; Hans Meine (Int. J. Comput. Assist. Radiol. Surg., 2021)

Quantitative Analysis of Liver Disease Using MRI-Based Radiomic Features of the Liver and Spleen. - Jordan Sack; Jennifer Nitsch; Hans Meine; Ron Kikinis; Michael Halle; Anna E. Rutherford (J. Imaging, 2022)

A High-Performance SurfaceNets Discrete Isocontouring Algorithm. - William J. Schroeder; Spiros Tsalikis; Michael Halle; Sarah F. Frisken (CoRR, 2024)

Open Meshed Anatomy: Towards a comprehensive finite element hexahedral mesh derived from open atlases. - Andy Trung Huynh; Benjamin Zwick; Michael Halle; Adam Wittek; Karol Miller (CoRR, 2024)

Hexahedral mesh of anatomical atlas for construction of computational human brain models: Applications to modeling biomechanics and bioelectric field propagation. - Andy Trung Huynh; Benjamin Zwick; Mostafa Jamshidian; Michael Halle; Adam Wittek; Karol Miller (CoRR, 2024)

Personalizing the meshed SPL/NAC Brain Atlas for patient-specific scientific computing using SynthMorph. - Andy Trung Huynh; Benjamin Zwick; Michael Halle; Adam Wittek; Karol Miller (CoRR, 2025)