2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments. - Jens Allmer; Sebastian Kuhlgert; Michael Hippler (BMC Bioinform., 2008)

Proteomics to go: Proteomatic enables the user-friendly creation of versatile MS/MS data evaluation workflows. - Michael Specht; Sebastian Kuhlgert; Christian Fufezan; Michael Hippler (Bioinform., 2011)

pymzML - Python module for high-throughput bioinformatics on mass spectrometry data. - Till Bald; Johannes Barth; Anna Niehues; Michael Specht; Michael Hippler; Christian Fufezan (Bioinform., 2012)

pymzML v2.0: introducing a highly compressed and seekable gzip format. - M. Kösters; Johannes Leufken; Stefan Schulze; K. Sugimoto; Joshua Klein; R. P. Zahedi; Michael Hippler; S. A Leidel; Christian Fufezan (Bioinform., 2018)

SugarPy facilitates the universal, discovery-driven analysis of intact glycopeptides. - Stefan Schulze; Anne Oltmanns; Christian Fufezan; Julia Krägenbring; Michael Mormann; Mechthild Pohlschröder; Michael Hippler (Bioinform., 2021)