% csauthors.net - beta - BibTeX bibliography of Michael Hucka
@inproceedings{conf/icml/LairdHYT90,
title = {Correcting and Extending Domain Knowledge using Outside Guidance.},
year = {1990},
booktitle = {ML},
author = {{John E. Laird} and {Michael Hucka} and {Eric S. Yager} and {Christopher M. Tuck}},
publisher = {Morgan Kaufmann},
booktitle = {Machine Learning, Proceedings of the Seventh International Conference on Machine Learning, Austin, Texas, USA, June 21-23, 1990}
}
@article{journals/ras/LairdYHT91,
title = {Robo-Soar: An integration of external interaction, planning, and learning using Soar.},
year = {1991},
journal = {Robotics Auton. Syst.},
author = {{John E. Laird} and {Eric S. Yager} and {Michael Hucka} and {Christopher M. Tuck}}
}
@article{journals/sigart/LairdHHR91,
title = {An Analysis of Soar as an Integrated Architecture.},
year = {1991},
journal = {SIGART Bull.},
author = {{John E. Laird} and {Michael Hucka} and {Scott B. Huffman} and {Paul S. Rosenbloom}}
}
@phdthesis{phd/us/Hucka98,
title = {Approximate spatial layout processing in the visual system: Modeling texture-based segmentation and shape estimation.},
year = {1998},
author = {{Michael Hucka}}
}
@inproceedings{conf/psb/HuckaFSBDK02,
title = {The ERATO Systems Biology Workbench: Enabling Interaction and Exchange Between Software Tools for Computational Biology.},
year = {2002},
booktitle = {Pacific Symposium on Biocomputing},
author = {{Michael Hucka} and {Andrew Finney} and {Herbert M. Sauro} and {H. Bolouri} and {John C. Doyle} and {Hiroaki Kitano}},
booktitle = {Proceedings of the 7th Pacific Symposium on Biocomputing, PSB 2002, Lihue, Hawaii, USA, January 3-7, 2002}
}
@article{journals/ijon/GoddardBCCGHHRSSH02,
title = {NeuroML for plug and play neuronal modeling.},
year = {2002},
journal = {Neurocomputing},
author = {{Nigel H. Goddard} and {David Beeman} and {Robert C. Cannon} and {Hugo Cornelis} and {Marc-Oliver Gewaltig} and {Greg Hood} and {Fredrick W. Howell} and {P. Rogister} and {Erik De Schutter} and {K. Shankar} and {Michael Hucka}}
}
@article{journals/bioinformatics/HuckaFS03,
title = {The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.},
year = {2003},
journal = {Bioinform.},
author = {{Michael Hucka} and {Andrew Finney} and {Herbert M. Sauro} and {H. Bolouri} and {John C. Doyle} and {Hiroaki Kitano} and {Adam P. Arkin} and {Benjamin J. Bornstein} and {Dennis Bray} and {Athel Cornish-Bowden} and {Autumn A. Cuellar} and {Serge Dronov} and {Ernst Dieter Gilles} and {Martin Ginkel} and {Victoria Gor} and {Igor Goryanin} and {W. J. Hedley} and {T. Charles Hodgman} and {Jan-Hendrik S. Hofmeyr} and {Peter J. Hunter} and {Nick S. Juty} and {J. L. Kasberger} and {Andreas Kremling} and {Ursula Kummer} and {Nicolas Le Novère} and {Leslie M. Loew} and {D. Lucio} and {Pedro Mendes 001} and {E. Minch} and {Eric Mjolsness} and {Yoichi Nakayama} and {M. R. Nelson} and {Poul M. F. Nielsen} and {T. Sakurada} and {James C. Schaff} and {Bruce E. Shapiro} and {Thomas Simon Shimizu} and {Hugh D. Spence} and {Jörg Stelling} and {Koichi Takahashi} and {Masaru Tomita} and {J. Wagner} and {J. Wang}}
}
@article{journals/bioinformatics/ShapiroHFD04,
title = {MathSBML: a package for manipulating SBML-based biological models.},
year = {2004},
journal = {Bioinform.},
author = {{Bruce E. Shapiro} and {Michael Hucka} and {Andrew Finney} and {John Doyle}}
}
@inproceedings{conf/wsc/SauroHKSUHMST06,
title = {Challenges for modeling and simulation methods in systems biology.},
year = {2006},
booktitle = {WSC},
author = {{Herbert M. Sauro} and {David Harel} and {Marta Z. Kwiatkowska} and {Clifford A. Shaffer} and {Adelinde M. Uhrmacher} and {Michael Hucka} and {Pedro Mendes 001} and {Lena Strömbäck} and {John J. Tyson}},
publisher = {IEEE Computer Society},
booktitle = {Proceedings of the Winter Simulation Conference WSC 2006, Monterey, California, USA, December 3-6, 2006}
}
@article{journals/bioinformatics/KeatingBFH06,
title = {SBMLToolbox: an SBML toolbox for MATLAB users.},
year = {2006},
journal = {Bioinform.},
author = {{Sarah M. Keating} and {Benjamin J. Bornstein} and {Andrew Finney} and {Michael Hucka}}
}
@article{journals/bioinformatics/SchilstraLMFHN06,
title = {CellML2SBML: conversion of CellML into SBML.},
year = {2006},
journal = {Bioinform.},
author = {{Maria J. Schilstra} and {Lu Li 002} and {Joanne Matthews} and {Andrew Finney} and {Michael Hucka} and {Nicolas Le Novère}}
}
@article{journals/nar/NovereBBCDDLSSSSH06,
title = {BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.},
year = {2006},
journal = {Nucleic Acids Res.},
author = {{Nicolas Le Novère} and {Benjamin J. Bornstein} and {Alexander Broicher} and {Mélanie Courtot} and {Marco Donizelli} and {Harish Dharuri} and {Lu Li 002} and {Herbert M. Sauro} and {Maria J. Schilstra} and {Bruce E. Shapiro} and {Jacky L. Snoep} and {Michael Hucka}}
}
@article{journals/bioinformatics/BornsteinKJH08,
title = {LibSBML: an API Library for SBML.},
year = {2008},
journal = {Bioinform.},
author = {{Benjamin J. Bornstein} and {Sarah M. Keating} and {Akiya Jouraku} and {Michael Hucka}}
}
@article{journals/bioinformatics/DragerPWSHEGMZ09,
title = {SBML2LATEX: Conversion of SBML files into human-readable reports.},
year = {2009},
journal = {Bioinform.},
author = {{Andreas Dräger} and {Hannes Planatscher} and {Dieudonné Motsou Wouamba} and {Adrian Schröder} and {Michael Hucka} and {Lukas Endler} and {Martin Golebiewski} and {Wolfgang Müller 001} and {Andreas Zell}}
}
@article{journals/bmcsb/LiDRDECLHHSSHNL10,
title = {BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models.},
year = {2010},
journal = {BMC Syst. Biol.},
author = {{Chen Li 011} and {Marco Donizelli} and {Nicolas Rodriguez 001} and {Harish Dharuri} and {Lukas Endler} and {Vijayalakshmi Chelliah} and {Lu Li 002} and {Enuo He} and {Arnaud Henry} and {Melanie I. Stefan} and {Jacky L. Snoep} and {Michael Hucka} and {Nicolas Le Novère} and {Camille Laibe}}
}
@inproceedings{conf/eScience/HuckaBKS11,
title = {A Profile of Today's SBML-Compatible Software.},
year = {2011},
booktitle = {e-Science Workshops},
author = {{Michael Hucka} and {Frank T. Bergmann} and {Sarah M. Keating} and {Lucian P. Smith}},
publisher = {IEEE Computer Society},
booktitle = {IEEE 7th International Conference on E-Science, e-Science 2011, Workshop Proceedings, Stockholm, Sweden, December 5-8, 2011}
}
@article{journals/bioinformatics/DragerRDDWNZH11,
title = {JSBML: a flexible Java library for working with SBML.},
year = {2011},
journal = {Bioinform.},
author = {{Andreas Dräger} and {Nicolas Rodriguez 001} and {Marine Dumousseau} and {Alexander Dörr} and {Clemens Wrzodek} and {Nicolas Le Novère} and {Andreas Zell} and {Michael Hucka}}
}
@article{journals/bmcsb/WaltemathABHKMMNSSN11,
title = {Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language.},
year = {2011},
journal = {BMC Syst. Biol.},
author = {{Dagmar Waltemath} and {Richard R. Adams} and {Frank T. Bergmann} and {Michael Hucka} and {Fedor A. Kolpakov} and {Andrew K. Miller} and {Ion I. Moraru} and {David P. Nickerson} and {Sven Sahle} and {Jacky L. Snoep} and {Nicolas Le Novère}}
}
@article{journals/ploscb/WaltemathABBBBCCCCGHHHKLMMNNNSSSSTWN11,
title = {Minimum Information About a Simulation Experiment (MIASE).},
year = {2011},
journal = {PLoS Comput. Biol.},
author = {{Dagmar Waltemath} and {Richard R. Adams} and {Daniel A. Beard} and {Frank T. Bergmann} and {Upinder S. Bhalla} and {Randall Britten} and {Vijayalakshmi Chelliah} and {Mike T. Cooling} and {Jonathan Cooper} and {Edmund J. Crampin} and {Alan Garny} and {Stefan Hoops} and {Michael Hucka} and {Peter J. Hunter} and {Edda Klipp} and {Camille Laibe} and {Andrew K. Miller} and {Ion I. Moraru} and {David P. Nickerson} and {Poul M. F. Nielsen} and {Macha Nikolski} and {Sven Sahle} and {Herbert M. Sauro} and {Henning Schmidt} and {Jacky L. Snoep} and {Dominic P. Tolle} and {Olaf Wolkenhauer} and {Nicolas Le Novère}}
}
@article{journals/bmcsb/BuchelRSWCKMSGGIKRWHHK0MZCSSLDN13,
title = {Path2Models: large-scale generation of computational models from biochemical pathway maps.},
year = {2013},
journal = {BMC Syst. Biol.},
author = {{Finja Büchel} and {Nicolas Rodriguez 001} and {Neil Swainston} and {Clemens Wrzodek} and {Tobias Czauderna} and {Roland Keller} and {Florian Mittag} and {Michael Schubert} and {Mihai Glont} and {Martin Golebiewski} and {Martijn P. van Iersel} and {Sarah M. Keating} and {Matthias Rall} and {Michael Wybrow} and {Henning Hermjakob} and {Michael Hucka} and {Douglas B. Kell} and {Wolfgang Müller 001} and {Pedro Mendes 001} and {Andreas Zell} and {Claudine Chaouiya} and {Julio Saez-Rodriguez} and {Falk Schreiber} and {Camille Laibe} and {Andreas Dräger} and {Nicolas Le Novère}}
}
@article{journals/bmcsb/ChaouiyaBKNIRDBCKWGDPMKXJHKTNSH13,
title = {SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.},
year = {2013},
journal = {BMC Syst. Biol.},
author = {{Claudine Chaouiya} and {Duncan Bérenguier} and {Sarah M. Keating} and {Aurélien Naldi} and {Martijn P. van Iersel} and {Nicolas Rodriguez 001} and {Andreas Dräger} and {Finja Büchel} and {Thomas Cokelaer} and {Bryan M. Kowal} and {Benjamin Wicks} and {Emanuel J. V. Gonçalves} and {Julien Dorier} and {Michel Page} and {Pedro T. Monteiro 001} and {Axel von Kamp} and {Ioannis Xenarios} and {Hidde de Jong} and {Michael Hucka} and {Steffen Klamt} and {Denis Thieffry} and {Nicolas Le Novère} and {Julio Saez-Rodriguez} and {Tomás Helikar}}
}
@article{journals/bmcbi/BergmannAMCGGHLMNORSSSWYN14,
title = {COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.},
year = {2014},
journal = {BMC Bioinform.},
author = {{Frank T. Bergmann} and {Richard R. Adams} and {Stuart L. Moodie} and {Jonathan Cooper} and {Mihai Glont} and {Martin Golebiewski} and {Michael Hucka} and {Camille Laibe} and {Andrew K. Miller} and {David P. Nickerson} and {Brett G. Olivier} and {Nicolas Rodriguez 001} and {Herbert M. Sauro} and {Martin Scharm} and {Stian Soiland-Reyes} and {Dagmar Waltemath} and {Florent Yvon} and {Nicolas Le Novère}}
}
@article{journals/corr/BergmannAMCGGHLMNORSSSWYN14,
title = {COMBINE archive: One File To Share Them All.},
year = {2014},
journal = {CoRR},
author = {{Frank T. Bergmann} and {Richard Adams} and {Stuart L. Moodie} and {Jonathan Cooper} and {Mihai Glont} and {Martin Golebiewski} and {Michael Hucka} and {Camille Laibe} and {Andrew K. Miller} and {David P. Nickerson} and {Brett G. Olivier} and {Nicolas Rodriguez 001} and {Herbert M. Sauro} and {Martin Scharm} and {Stian Soiland-Reyes} and {Dagmar Waltemath} and {Florent Yvon} and {Nicolas Le Novère}}
}
@incollection{reference/cn/Hucka14,
title = {Systems Biology Markup Language (SBML).},
year = {2014},
booktitle = {Encyclopedia of Computational Neuroscience},
author = {{Michael Hucka}},
publisher = {Springer},
booktitle = {Encyclopedia of Computational Neuroscience}
}
@article{journals/bioinformatics/RodriguezTWVKGM15,
title = {JSBML 1.0: providing a smorgasbord of options to encode systems biology models.},
year = {2015},
journal = {Bioinform.},
author = {{Nicolas Rodriguez 001} and {Alex Thomas} and {Leandro H. Watanabe} and {Ibrahim Y. Vazirabad} and {Victor Kofia} and {Harold F. Gómez} and {Florian Mittag} and {Jakob Matthes} and {Jan Rudolph} and {Finja Wrzodek} and {Eugen Netz} and {Alexander Diamantikos} and {Johannes Eichner} and {Roland Keller} and {Clemens Wrzodek} and {Sebastian Fröhlich} and {Nathan E. Lewis} and {Chris J. Myers} and {Nicolas Le Novère} and {Bernhard Ø. Palsson} and {Michael Hucka} and {Andreas Dräger}}
}
@article{journals/jib/HuckaBDHKNMOSSS15,
title = {Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions.},
year = {2015},
journal = {J. Integr. Bioinform.},
author = {{Michael Hucka} and {Frank T. Bergmann} and {Andreas Dräger} and {Stefan Hoops} and {Sarah M. Keating} and {Nicolas Le Novère} and {Chris J. Myers} and {Brett G. Olivier} and {Sven Sahle} and {James C. Schaff} and {Lucian P. Smith} and {Dagmar Waltemath} and {Darren J. Wilkinson}}
}
@article{journals/jib/HuckaBHKSSSW15,
title = {The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.},
year = {2015},
journal = {J. Integr. Bioinform.},
author = {{Michael Hucka} and {Frank T. Bergmann} and {Stefan Hoops} and {Sarah M. Keating} and {Sven Sahle} and {James C. Schaff} and {Lucian P. Smith} and {Darren J. Wilkinson}}
}
@article{journals/jib/SchreiberBGHKNM15,
title = {Specifications of Standards in Systems and Synthetic Biology.},
year = {2015},
journal = {J. Integr. Bioinform.},
author = {{Falk Schreiber} and {Gary D. Bader} and {Martin Golebiewski} and {Michael Hucka} and {Benjamin Kormeier} and {Nicolas Le Novère} and {Chris J. Myers} and {David P. Nickerson} and {Björn Sommer 001} and {Dagmar Waltemath} and {Stephan Weise}}
}
@article{journals/jib/SmithHHFGMML15,
title = {SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3.},
year = {2015},
journal = {J. Integr. Bioinform.},
author = {{Lucian Paul Smith} and {Michael Hucka} and {Stefan Hoops} and {Andrew Finney} and {Martin Ginkel} and {Chris J. Myers} and {Ion I. Moraru} and {Wolfram Liebermeister}}
}
@article{journals/nar/ChelliahJAADGHJKKLNPRSWZHNL15,
title = {BioModels: ten-year anniversary.},
year = {2015},
journal = {Nucleic Acids Res.},
author = {{Vijayalakshmi Chelliah} and {Nick S. Juty} and {Ishan Ajmera} and {Raza Ali} and {Marine Dumousseau} and {Mihai Glont} and {Michael Hucka} and {Gaël Jalowicki} and {Sarah M. Keating} and {Vincent Knight-Schrijver} and {Audald Lloret-Villas} and {Kedar Nath Natarajan} and {Jean-Baptiste Pettit} and {Nicolas Rodriguez 001} and {Michael Schubert} and {Sarala M. Wimalaratne} and {Yangyang Zhao} and {Henning Hermjakob} and {Nicolas Le Novère} and {Camille Laibe}}
}
@article{journals/bioinformatics/GomezHKNIS16,
title = {MOCCASIN: converting MATLAB ODE models to SBML.},
year = {2016},
journal = {Bioinform.},
author = {{Harold F. Gómez} and {Michael Hucka} and {Sarah M. Keating} and {German Nudelman} and {Dagmar Iber} and {Stuart C. Sealfon}}
}
@article{journals/corr/HuckaG16,
title = {Software search is not a science, even among scientists.},
year = {2016},
journal = {CoRR},
author = {{Michael Hucka} and {Matthew J. Graham}}
}
@article{journals/jib/HuckaS16,
title = {SBML Level 3 package: Groups, Version 1 Release 1.},
year = {2016},
journal = {J. Integr. Bioinform.},
author = {{Michael Hucka} and {Lucian P. Smith}}
}
@article{journals/jib/SchreiberBGGHNM16,
title = {Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.},
year = {2016},
journal = {J. Integr. Bioinform.},
author = {{Falk Schreiber} and {Gary D. Bader} and {Padraig Gleeson} and {Martin Golebiewski} and {Michael Hucka} and {Nicolas Le Novère} and {Chris J. Myers} and {David P. Nickerson} and {Björn Sommer 001} and {Dagmar Waltemath}}
}
@article{journals/peerjpre/KatzNSABHHHLLPR16,
title = {Software vs. data in the context of citation.},
year = {2016},
journal = {PeerJ Prepr.},
author = {{Daniel S. Katz} and {Kyle E. Niemeyer} and {Arfon M. Smith} and {William L. Anderson} and {Carl Boettiger} and {Konrad Hinsen} and {Rob W. W. Hooft} and {Michael Hucka} and {Allen Lee} and {Frank Löffler 001} and {Tom J. Pollard} and {Fernando Rios}}
}
@article{journals/tbe/WaltemathKBCHKL16,
title = {Toward Community Standards and Software for Whole-Cell Modeling.},
year = {2016},
journal = {IEEE Trans. Biomed. Eng.},
author = {{Dagmar Waltemath} and {Jonathan R. Karr} and {Frank T. Bergmann} and {Vijayalakshmi Chelliah} and {Michael Hucka} and {Marcus Krantz} and {Wolfram Liebermeister} and {Pedro Mendes 001} and {Chris J. Myers} and {Pinar Pir} and {Begum Alaybeyoglu} and {Naveen K. Aranganathan} and {Kambiz Baghalian} and {Arne T. Bittig} and {Paulo E. Pinto Burke} and {Matteo Cantarelli} and {Yin Hoon Chew} and {Rafael S. Costa} and {Joseph Cursons} and {Tobias Czauderna} and {Arthur P. Goldberg} and {Harold F. Gómez} and {Jens Hahn} and {Tuure Hameri} and {Daniel F. Hernandez Gardiol} and {Denis Kazakiewicz} and {Ilya Kiselev} and {Vincent Knight-Schrijver} and {Christian Knüpfer} and {Matthias König 003} and {Daewon Lee} and {Audald Lloret-Villas} and {Nikita Mandrik} and {J. Kyle Medley} and {Bertrand Moreau} and {Hojjat Naderi-Meshkin} and {Sucheendra K. Palaniappan} and {Daniel Priego-Espinosa} and {Martin Scharm} and {Mahesh Sharma} and {Kieran Smallbone} and {Natalie J. Stanford} and {Je-Hoon Song} and {Tom Theile} and {Milenko Tokic} and {Namrata Tomar} and {Vasundra Touré} and {Jannis Uhlendorf} and {Thawfeek M. Varusai} and {Leandro H. Watanabe} and {Florian Wendland} and {Markus Wolfien} and {James T. Yurkovich} and {Yan Zhu 006} and {Argyris Zardilis} and {Anna Zhukova} and {Falk Schreiber}}
}
@inproceedings{conf/wsc/MyersBGGHNNSW17,
title = {A brief history of COMBINE.},
year = {2017},
booktitle = {WSC},
author = {{Chris J. Myers} and {Gary D. Bader} and {Padraig Gleeson} and {Martin Golebiewski} and {Michael Hucka} and {Nicolas Le Novère} and {David P. Nickerson} and {Falk Schreiber} and {Dagmar Waltemath}},
publisher = {IEEE},
booktitle = {2017 Winter Simulation Conference, WSC 2017, Las Vegas, NV, USA, December 3-6, 2017}
}
@article{journals/jib/HuckaBDHKNMOSSS18,
title = {The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.},
year = {2018},
journal = {J. Integr. Bioinform.},
author = {{Michael Hucka} and {Frank T. Bergmann} and {Andreas Dräger} and {Stefan Hoops} and {Sarah M. Keating} and {Nicolas Le Novère} and {Chris J. Myers} and {Brett G. Olivier} and {Sven Sahle} and {James C. Schaff} and {Lucian P. Smith} and {Dagmar Waltemath} and {Darren J. Wilkinson}}
}
@article{journals/jib/HuckaBDHKNMOSSS18a,
title = {The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.},
year = {2018},
journal = {J. Integr. Bioinform.},
author = {{Michael Hucka} and {Frank T. Bergmann} and {Andreas Dräger} and {Stefan Hoops} and {Sarah M. Keating} and {Nicolas Le Novère} and {Chris J. Myers} and {Brett G. Olivier} and {Sven Sahle} and {James C. Schaff} and {Lucian P. Smith} and {Dagmar Waltemath} and {Darren J. Wilkinson}}
}
@article{journals/jib/SchreiberBGGHKN18,
title = {Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.},
year = {2018},
journal = {J. Integr. Bioinform.},
author = {{Falk Schreiber} and {Gary D. Bader} and {Padraig Gleeson} and {Martin Golebiewski} and {Michael Hucka} and {Sarah M. Keating} and {Nicolas Le Novère} and {Chris J. Myers} and {David P. Nickerson} and {Björn Sommer 001} and {Dagmar Waltemath}}
}
@article{journals/jossw/Hucka18,
title = {Spiral: splitters for identifiers in source code files.},
year = {2018},
journal = {J. Open Source Softw.},
author = {{Michael Hucka}}
}
@article{journals/jossw/Hucka18a,
title = {Nostril: A nonsense string evaluator written in Python.},
year = {2018},
journal = {J. Open Source Softw.},
author = {{Michael Hucka}}
}
@article{journals/jss/HuckaG18,
title = {Software search is not a science, even among scientists: A survey of how scientists and engineers find software.},
year = {2018},
journal = {J. Syst. Softw.},
author = {{Michael Hucka} and {Matthew J. Graham}}
}
@article{journals/bib/NealKNMKDACCCCA19,
title = {Harmonizing semantic annotations for computational models in biology.},
year = {2019},
journal = {Briefings Bioinform.},
author = {{Maxwell Lewis Neal} and {Matthias König 003} and {David P. Nickerson} and {Goksel Misirli} and {Reza Kalbasi} and {Andreas Dräger} and {Koray Atalag} and {Vijayalakshmi Chelliah} and {Michael T. Cooling} and {Daniel L. Cook} and {Sharon M. Crook} and {Miguel de Alba} and {Samuel H. Friedman} and {Alan Garny} and {John H. Gennari} and {Padraig Gleeson} and {Martin Golebiewski} and {Michael Hucka} and {Nick S. Juty} and {Chris J. Myers} and {Brett G. Olivier} and {Herbert M. Sauro} and {Martin Scharm} and {Jacky L. Snoep} and {Vasundra Touré} and {Anil Wipat} and {Olaf Wolkenhauer} and {Dagmar Waltemath}}
}
@article{journals/jib/HuckaBCDHKKNMOS19,
title = {The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.},
year = {2019},
journal = {J. Integr. Bioinform.},
author = {{Michael Hucka} and {Frank T. Bergmann} and {Claudine Chaouiya} and {Andreas Dräger} and {Stefan Hoops} and {Sarah M. Keating} and {Matthias König 003} and {Nicolas Le Novère} and {Chris J. Myers} and {Brett G. Olivier} and {Sven Sahle} and {James C. Schaff} and {Rahuman S. Malik-Sheriff} and {Lucian P. Smith} and {Dagmar Waltemath} and {Darren J. Wilkinson} and {Fengkai Zhang}}
}
@article{journals/jib/SchreiberSBGGHK19,
title = {Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.},
year = {2019},
journal = {J. Integr. Bioinform.},
author = {{Falk Schreiber} and {Björn Sommer 001} and {Gary D. Bader} and {Padraig Gleeson} and {Martin Golebiewski} and {Michael Hucka} and {Sarah M. Keating} and {Matthias König 003} and {Chris J. Myers} and {David P. Nickerson} and {Dagmar Waltemath}}
}
@article{journals/corr/abs-2012-13117,
title = {Nine Best Practices for Research Software Registries and Repositories: A Concise Guide.},
year = {2020},
journal = {CoRR},
author = {{Alain Monteil} and {Alejandra N. González-Beltrán} and {Alexandros Ioannidis} and {Alice Allen} and {Allen Lee} and {Anita E. Bandrowski} and {Bruce E. Wilson} and {Bryce D. Mecum} and {Caifan Du} and {Carly Robinson} and {Daniel Garijo} and {Daniel S. Katz} and {David Long} and {Genevieve Milliken} and {Hervé Ménager} and {Jessica Hausman} and {Jurriaan H. Spaaks} and {Katrina Fenlon} and {Kristin Vanderbilt} and {Lorraine J. Hwang} and {Lynn Davis} and {Martin Fenner} and {Michael R. Crusoe} and {Michael Hucka} and {Mingfang Wu} and {Neil P. Chue Hong} and {Peter J. Teuben} and {Shelley Stall} and {Stephan Druskat} and {Ted Carnevale} and {Thomas Morrell}}
}
@article{journals/jib/SchreiberSCGGHK20,
title = {Specifications of standards in systems and synthetic biology: status and developments in 2020.},
year = {2020},
journal = {J. Integr. Bioinform.},
author = {{Falk Schreiber} and {Björn Sommer 001} and {Tobias Czauderna} and {Martin Golebiewski} and {Thomas E. Gorochowski} and {Michael Hucka} and {Sarah M. Keating} and {Matthias König 003} and {Chris J. Myers} and {David P. Nickerson} and {Dagmar Waltemath}}
}
@article{journals/jib/SmithMBGKKMSWH20,
title = {Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1.},
year = {2020},
journal = {J. Integr. Bioinform.},
author = {{Lucian P. Smith} and {Stuart L. Moodie} and {Frank T. Bergmann} and {Colin S. Gillespie} and {Sarah M. Keating} and {Matthias König 003} and {Chris J. Myers} and {Maciek J. Swat} and {Darren J. Wilkinson} and {Michael Hucka}}
}
@article{journals/jib/WaltemathGBGHHI20,
title = {The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE).},
year = {2020},
journal = {J. Integr. Bioinform.},
author = {{Dagmar Waltemath} and {Martin Golebiewski} and {Michael L. Blinov} and {Padraig Gleeson} and {Henning Hermjakob} and {Michael Hucka} and {Esther Thea Inau} and {Sarah M. Keating} and {Matthias König 003} and {Olga Krebs} and {Rahuman S. Malik-Sheriff} and {David P. Nickerson} and {Ernst Oberortner} and {Herbert M. Sauro} and {Falk Schreiber} and {Lucian P. Smith} and {Melanie I. Stefan} and {Ulrike Wittig} and {Chris J. Myers}}
}
@article{journals/jib/ZhangSBFHTKRDHF20,
title = {Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2.},
year = {2020},
journal = {J. Integr. Bioinform.},
author = {{Fengkai Zhang} and {Lucian P. Smith} and {Michael L. Blinov} and {James R. Faeder} and {William S. Hlavacek} and {José Juan Tapia} and {Sarah M. Keating} and {Nicolas Rodriguez 001} and {Andreas Dräger} and {Leonard A. Harris} and {Andrew Finney} and {Bin Hu} and {Michael Hucka} and {Martin Meier-Schellersheim}}
}
@article{journals/nar/Malik-SheriffGN20,
title = {BioModels - 15 years of sharing computational models in life science.},
year = {2020},
journal = {Nucleic Acids Res.},
author = {{Rahuman S. Malik-Sheriff} and {Mihai Glont} and {Tung V. N. Nguyen} and {Krishan K. Tiwari} and {Matthew G. Roberts} and {Ashley Xavier} and {Manh T. Vu} and {Jinghao Men} and {Matthieu Maire} and {Sarubini Kananathan} and {Emma L. Fairbanks} and {Johannes P. Meyer} and {Chinmay Arankalle} and {Thawfeek M. Varusai} and {Vincent Knight-Schrijver} and {Lu Li 002} and {Corina Dueñas-Roca} and {Gaurhari Dass} and {Sarah M. Keating} and {Young Mi Park} and {Nicola Buso} and {Nicolas Rodriguez 001} and {Michael Hucka} and {Henning Hermjakob}}
}
@article{journals/jib/SchreiberGGGHKK21,
title = {Specifications of standards in systems and synthetic biology: status and developments in 2021.},
year = {2021},
journal = {J. Integr. Bioinform.},
author = {{Falk Schreiber} and {Padraig Gleeson} and {Martin Golebiewski} and {Thomas E. Gorochowski} and {Michael Hucka} and {Sarah M. Keating} and {Matthias König 003} and {Chris J. Myers} and {David P. Nickerson} and {Björn Sommer 001} and {Dagmar Waltemath}}
}
@article{journals/peerj-cs/GarijoMHTHMA22,
title = {Nine best practices for research software registries and repositories.},
year = {2022},
journal = {PeerJ Comput. Sci.},
author = {{Daniel Garijo} and {Hervé Ménager} and {Lorraine J. Hwang} and {Ana Trisovic} and {Michael Hucka} and {Thomas Morrell} and {Alice Allen}}
}
@article{journals/jib/KonigGGGHKMNSWS23,
title = {Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022.},
year = {2023},
month = {March},
journal = {J. Integr. Bioinform.},
author = {{Matthias König 003} and {Padraig Gleeson} and {Martin Golebiewski} and {Thomas E. Gorochowski} and {Michael Hucka} and {Sarah M. Keating} and {Chris J. Myers} and {David P. Nickerson} and {Björn Sommer 001} and {Dagmar Waltemath} and {Falk Schreiber}}
}