The role of likelihood and entropy in incomplete-data problems: Applications to estimating point-process intensities and toeplitz constrained covariances. - Michael I. Miller; Donald L. Snyder (Proc. IEEE, 1987)

Bayesian imaging using Good's roughness measure-implementation on a massively parallel processor. - Badrinath Roysam; Jay A. Shrauner; Michael I. Miller (ICASSP, 1988)

On the existence of positive-definite maximum-likelihood estimates of structured covariance matrices. - Daniel R. Fuhrmann; Michael I. Miller (IEEE Trans. Inf. Theory, 1988)

A unified approach for hierarchical imaging based on joint hypothesis testing and parameter estimation. - Badrinath Roysam; Michael I. Miller (ICASSP, 1989)

Learning regular grammars on connection architectures. - Kurt R. Smith; Michael I. Miller (ICASSP, 1989)

Bayesian Inference of Regular Grammar and Markov Source Models. - Kurt R. Smith; Michael I. Miller (NIPS, 1989)

The use of maximum likelihood estimation for forming images of diffuse radar targets from delay-Doppler data. - Donald L. Snyder; Joseph A. O'Sullivan; Michael I. Miller (IEEE Trans. Inf. Theory, 1989)

Stochastic representation of memoryless Boolean functions: application to boundary estimation at low contrast. - Badrinath Roysam; Michael I. Miller (ICASSP, 1990)

A Bayesian approach incorporating Rissanen complexity for learning Markov random field texture models. - Kurt R. Smith; Michael I. Miller (ICASSP, 1990)

Maximum-likelihood narrow-band direction finding and the EM algorithm. - Michael I. Miller; Daniel R. Fuhrmann (IEEE Trans. Acoust. Speech Signal Process., 1990)

Representing and computing regular languages on massively parallel networks. - Michael I. Miller; Badrinath Roysam; Kurt R. Smith; Joseph A. O'Sullivan (IEEE Trans. Neural Networks, 1991)

Combining stochastic and syntactic processing with analog computation methods. - Badrinath Roysam; Michael I. Miller (Digit. Signal Process., 1992)

Large deviations for the asymptotics of Ziv-Lempel codes for 2-D Gibbs fields. - Yali Amit; Michael I. Miller (IEEE Trans. Inf. Theory, 1992)

Entropies and combinatorics of random branching processes and context-free languages. - Michael I. Miller; Joseph A. O'Sullivan (IEEE Trans. Inf. Theory, 1992)

Large deviations for coding Markov chains and Gibbs random fields. - Yali Amit; Michael I. Miller (IEEE Trans. Inf. Theory, 1993)

Maximum a posteriori estimation for SPECT using regularization techniques on massively parallel computers. - Christopher S. Butler; Michael I. Miller (IEEE Trans. Medical Imaging, 1993)

3-D maximum a posteriori estimation for single photon emission computed tomography on massively-parallel computers. - Michael I. Miller; Christopher S. Butler (IEEE Trans. Medical Imaging, 1993)

Maximum-likelihood estimation of complex sinusoids and Toeplitz covariances. - Michael J. Turmon; Michael I. Miller (IEEE Trans. Signal Process., 1994)

Parallel algorithms for maximum a posteriori estimation of spin density and spin-spin decay in magnetic resonance imaging. - Timothy J. Schaewe; Michael I. Miller (IEEE Trans. Medical Imaging, 1995)

Conditional-mean estimation via jump-diffusion processes in multiple target tracking/recognition. - Michael I. Miller; Anuj Srivastava; Ulf Grenander (IEEE Trans. Signal Process., 1995)

Multiple target direction of arrival tracking. - Anuj Srivastava; Michael I. Miller; Ulf Grenander (IEEE Trans. Signal Process., 1995)

Individualizing Anatomical Atlases of the Head. - Gary E. Christensen; Sarang C. Joshi; Michael I. Miller (VBC, 1996)

Individualizing Neuroanatomic Atlases Using a Massively Parallel Computer. - Gary E. Christensen; Michael I. Miller; Michael W. Vannier; Ulf Grenander (Computer, 1996)

Deformable templates using large deformation kinematics. - Gary E. Christensen; Richard D. Rabbitt; Michael I. Miller (IEEE Trans. Image Process., 1996)

Gaussian Random Fields on Sub-Manifolds for Characterizing Brain Surfaces. - Sarang C. Joshi; Ayananshu Banerjee; Gary E. Christensen; John G. Csernansky; John W. Haller; Michael I. Miller; Lei E. Wang (IPMI, 1997)

On The Geometry and Shape of Brain Sub-Manifolds. - Sarang C. Joshi; Michael I. Miller; Ulf Grenander (Int. J. Pattern Recognit. Artif. Intell., 1997)

Automatic target recognition organized via jump-diffusion algorithms. - Michael I. Miller; Ulf Grenander; Joseph A. O'Sullivan; Donald L. Snyder (IEEE Trans. Image Process., 1997)

Volumetric Transformation of Brain Anatomy. - Gary E. Christensen; Sarang C. Joshi; Michael I. Miller (IEEE Trans. Medical Imaging, 1997)

Hilbert-Schmidt Lower Bounds for Estimators on Matrix Lie Groups for ATR. - Ulf Grenander; Michael I. Miller; Anuj Srivastava (IEEE Trans. Pattern Anal. Mach. Intell., 1998)

Dynamic Programming Generation of Curves on Brain Surfaces. - Navin Khaneja; Michael I. Miller; Ulf Grenander (IEEE Trans. Pattern Anal. Mach. Intell., 1998)

Landmark matching on brain surfaces via large deformation diffeomorphisms on the sphere. - Muge M. Bakircioglu; Sarang C. Joshi; Michael I. Miller (Image Processing, 1999)

Bayesian Segmentation via Asymptotic Partition Functions. - Aaron D. Lanterman; Ulf Grenander; Michael I. Miller (IEEE Trans. Pattern Anal. Mach. Intell., 2000)

Landmark matching via large deformation diffeomorphisms. - Sarang C. Joshi; Michael I. Miller (IEEE Trans. Image Process., 2000)

Information measures for object recognition accommodating signature variability. - H. L. Cooper; Michael I. Miller (IEEE Trans. Inf. Theory, 2000)

Asymptotic performance analysis of Bayesian target recognition. - Ulf Grenander; Anuj Srivastava; Michael I. Miller (IEEE Trans. Inf. Theory, 2000)

Rate-distortion theory applied to automatic object recognition. - Eli Shusterman; Michael I. Miller; Bixio Rimoldi (IEEE Trans. Inf. Theory, 2000)

Monte Carlo Techniques for Automated Target Recognition. - Anuj Srivastava; Aaron D. Lanterman; Ulf Grenander; Marc Loizeaux; Michael I. Miller (Sequential Monte Carlo Methods in Practice, 2001)

Group Actions, Homeomorphisms, and Matching: A General Framework. - Michael I. Miller; Laurent Younes (Int. J. Comput. Vis., 2001)

Validating Cortical Surface Analysis of Medial Prefrontal Cortex. - J. Tilak Ratnanather; Kelly N. Botteron; T. Nishino; Allan B. Massie; Rakesh M. Lal; S. G. Patel; S. Peddi; R. D. Todd; Michael I. Miller (NeuroImage, 2001)

Statistical Analysis of Hippocampal Asymmetry in Schizophrenia. - Lei Wang 032; Sarang C. Joshi; Michael I. Miller; John G. Csernansky (NeuroImage, 2001)

Computational anatomy: computing metrics on anatomical shapes. - Mirza Faisal Beg; Michael I. Miller; Alain Trouvé; Laurent Younes (ISBI, 2002)

Information-Theoretic Bounds on Target Recognition Performance Based on Degraded Image Data. - Avinash Jain; Pierre Moulin; Michael I. Miller; Kannan Ramchandran (IEEE Trans. Pattern Anal. Mach. Intell., 2002)

The metric spaces, Euler equations, and normal geodesic image motions of computational anatomy. - Michael I. Miller; Alain Trouvé; Laurent Younes (ICIP (2), 2003)

The Euler-Lagrange Equation for Interpolating Sequence of Landmark Datasets. - Mirza Faisal Beg; Michael I. Miller; Alain Trouvé; Laurent Younes (MICCAI (2), 2003)

Semi-automated segmentation of cortical subvolumes via hierarchical mixture modeling. - J. Tilak Ratnanather; Carey E. Priebe; Michael I. Miller (Image Processing, 2003)

Dynamic programming generation of boundaries of local coordinatized submanifolds in the neocortex: application to the planum temporale. - J. Tilak Ratnanather; Patrick Barta; N. A. Honeycutt; Nayoung A. Lee; H. M. Morris; A. C. Dziorny; Monica K. Hurdal; Godfrey D. Pearlson; Michael I. Miller (NeuroImage, 2003)

Changes in hippocampal volume and shape across time distinguish dementia of the Alzheimer type from healthy aging☆. - Lei Wang 032; Jeffrey S. Swank; Irena E. Glick; Mokhtar H. Gado; Michael I. Miller; John C. Morris; John G. Csernansky (NeuroImage, 2003)

Landmark Matching via Large Deformation Diffeomorphisms on the Sphere. - Joan Alexis Glaunès; Marc Vaillant; Michael I. Miller (J. Math. Imaging Vis., 2004)

Biomedical Informatics Research Network: Integrating Multi-Site Neuroimaging Data Acquisition, Data Sharing and Brain Morphometric Processing. - Jorge Jovicich; Mirza Faisal Beg; Steve Pieper 001; Carey E. Priebe; Michael I. Miller; Randy L. Buckner; Bruce R. Rosen (CBMS, 2005)

Computational Anatomy for Generating 3D Avatars and Boosting Face Recognition Systems. - Marc Vaillant; G. Zang; J. Aliperti; N. Santhanam; S. Doucette; B. Hoffman; Michael I. Miller (CVPR Workshops, 2005)

Large Deformation Diffeomorphic Metric Mapping of Fiber Orientations. - Yan Cao; Michael I. Miller; Raimond L. Winslow; Laurent Younes (ICCV, 2005)

Semi-automated Basal Ganglia Segmentation Using Large Deformation Diffeomorphic Metric Mapping. - Ali R. Khan; Elizabeth H. Aylward; Patrick Barta; Michael I. Miller; Mirza Faisal Beg (MICCAI, 2005)

Computing Large Deformation Metric Mappings via Geodesic Flows of Diffeomorphisms. - Mirza Faisal Beg; Michael I. Miller; Alain Trouvé; Laurent Younes (Int. J. Comput. Vis., 2005)

Preclinical detection of Alzheimer's disease: hippocampal shape and volume predict dementia onset in the elderly. - John G. Csernansky; Lei Wang 032; Jeffrey S. Swank; J. Philip Miller; Mokhtar H. Gado; Daniel W. McKeel; Michael I. Miller; John C. Morris (NeuroImage, 2005)

DTI tractography based parcellation of white matter: Application to the mid-sagittal morphology of corpus callosum. - Hao Huang 016; Jiangyang Zhang; Hangyi Jiang; Setsu Wakana; Lidia Poetscher; Michael I. Miller; Peter C. M. van Zijl; Argye E. Hillis; Robert Wytik; Susumu Mori (NeuroImage, 2005)

Mapping postnatal mouse brain development with diffusion tensor microimaging. - Jiangyang Zhang; Michael I. Miller; Celine Plachez; Linda J. Richards; Paul Yarowsky; Peter C. M. van Zijl; Susumu Mori (NeuroImage, 2005)

Clutter Invariant ATR. - Dmitri Bitouk; Michael I. Miller; Laurent Younes (IEEE Trans. Pattern Anal. Mach. Intell., 2005)

A stochastic model for studying the laminar structure of cortex from MRI. - Patrick Barta; Michael I. Miller; Anqi Qiu (IEEE Trans. Medical Imaging, 2005)

Large deformation diffeomorphic metric mapping of vector fields. - Yan Cao; Michael I. Miller; Raimond L. Winslow; Laurent Younes (IEEE Trans. Medical Imaging, 2005)

Diffeomorphic Matching of Diffusion Tensor Images. - Yan Cao; Michael I. Miller; Susumu Mori; Raimond L. Winslow; Laurent Younes (CVPR Workshops, 2006)

Characterization of Mouse Brain and Its Development using Diffusion Tensor Imaging and Computational Techniques. - Jiangyang Zhang; Linda J. Richards; Michael I. Miller; Paul Yarowsky; Peter C. M. van Zijl; Susumu Mori (EMBC, 2006)

Segmenting magnetic resonance images via hierarchical mixture modelling. - Carey E. Priebe; Michael I. Miller; J. Tilak Ratnanather (Comput. Stat. Data Anal., 2006)

Geodesic Shooting for Computational Anatomy. - Michael I. Miller; Alain Trouvé; Laurent Younes (J. Math. Imaging Vis., 2006)

Estimating linear cortical magnification in human primary visual cortex via dynamic programming. - Anqi Qiu; Benjamin J. Tamber-Rosenau; Adam S. Greenberg; Monica K. Hurdal; Patrick Barta; Steven Yantis; Michael I. Miller (NeuroImage, 2006)

Abnormalities of hippocampal surface structure in very mild dementia of the Alzheimer type. - Lei Wang 032; J. Philip Miller; Mokhtar H. Gado; Daniel W. McKeel; Marcus Rothermich; Michael I. Miller; John C. Morris; John G. Csernansky (NeuroImage, 2006)

Smooth functional and structural maps on the neocortex via orthonormal bases of the Laplace-Beltrami operator. - Anqi Qiu; Dmitri Bitouk; Michael I. Miller (IEEE Trans. Medical Imaging, 2006)

Validation of Alternating Kernel Mixture Method Based Segmentation of the Human Brain. - Nayoung A. Lee; Carey E. Priebe; J. Tilak Ratnanather; Michael I. Miller (FBIT, 2007)

Hippocampus Shape-Space Analysis of Clinically Depressed, High Risk, and Control Populations. - Youngser Park; Carey E. Priebe; Kelly N. Botteron; Michael I. Miller; Nikhil R. Mohan (FBIT, 2007)

Cortical Hemisphere Registration Via Large Deformation Diffeomorphic Metric Curve Mapping. - Anqi Qiu; Michael I. Miller (MICCAI (1), 2007)

Combining anatomical manifold information via diffeomorphic metric mappings for studying cortical thinning of the cingulate gyrus in schizophrenia. - Anqi Qiu; Laurent Younes; Lei Wang 032; J. Tilak Ratnanather; Sarah K. Gillepsie; Gillian Kaplan; John G. Csernansky; Michael I. Miller (NeuroImage, 2007)

Diffeomorphic metric surface mapping in subregion of the superior temporal gyrus. - Marc Vaillant; Anqi Qiu; Joan Alexis Glaunès; Michael I. Miller (NeuroImage, 2007)

Evidence of slow maturation of the superior longitudinal fasciculus in early childhood by diffusion tensor imaging. - Jiangyang Zhang; Alan C. Evans; Laurent Hermoye; Seung-Koo Lee; Setsu Wakana; Weihong Zhang; Pamela K. Donohue; Michael I. Miller; Hao Huang 016; Xiaoqing Wang; Peter C. M. van Zijl; Susumu Mori (NeuroImage, 2007)

Large Deformation Diffeomorphism and Momentum Based Hippocampal Shape Discrimination in Dementia of the Alzheimer type. - Lei Wang 032; Mirza Faisal Beg; J. Tilak Ratnanather; Can Ceritoglu; Laurent Younes; John C. Morris; John G. Csernansky; Michael I. Miller (IEEE Trans. Medical Imaging, 2007)

Semisupervised learning from dissimilarity data. - Michael W. Trosset; Carey E. Priebe; Youngser Park; Michael I. Miller (Comput. Stat. Data Anal., 2008)

Large Deformation Diffeomorphic Metric Curve Mapping. - Joan Alexis Glaunès; Anqi Qiu; Michael I. Miller; Laurent Younes (Int. J. Comput. Vis., 2008)

Transport of Relational Structures in Groups of Diffeomorphisms. - Laurent Younes; Anqi Qiu; Raimond L. Winslow; Michael I. Miller (J. Math. Imaging Vis., 2008)

Bayesian template estimation in computational anatomy. - Jun Ma; Michael I. Miller; Alain Trouvé; Laurent Younes (NeuroImage, 2008)

Stereotaxic white matter atlas based on diffusion tensor imaging in an ICBM template. - Susumu Mori; Kenichi Oishi; Hangyi Jiang; Li Jiang; Xin Li 007; Kazi Akhter; Kegang Hua; Andreia V. Faria; Asif Mahmood; Roger P. Woods; Arthur W. Toga; G. Bruce Pike; et al. (NeuroImage, 2008)

Human brain white matter atlas: Identification and assignment of common anatomical structures in superficial white matter. - Kenichi Oishi; Karl Zilles; Katrin Amunts; Andreia Faria; Hangyi Jiang; Xin Li 007; Kazi Akhter; Kegang Hua; Roger P. Woods; Arthur W. Toga; G. Bruce Pike; Pedro Rosa-Neto; et al. (NeuroImage, 2008)

Multi-structure network shape analysis via normal surface momentum maps. - Anqi Qiu; Michael I. Miller (NeuroImage, 2008)

Intrinsic and extrinsic analysis in computational anatomy. - Anqi Qiu; Laurent Younes; Michael I. Miller (NeuroImage, 2008)

Parallel transport in diffeomorphisms distinguishes the time-dependent pattern of hippocampal surface deformation due to healthy aging and the dementia of the Alzheimer's type. - Anqi Qiu; Laurent Younes; Michael I. Miller; John G. Csernansky (NeuroImage, 2008)

Cardiac Motion Analysis in Ischemic and Non-Ischemic Cardiomyopathy Using Parallel Transport. - Siamak Ardekani; Robert G. Weiss; Albert C. Lardo; Richard T. George; Joao A. C. Lima; Katherine C. Wu; Michael I. Miller; Raimond L. Winslow; Laurent Younes (ISBI, 2009)

Multi-contrast large deformation diffeomorphic metric mapping for diffusion tensor imaging. - Can Ceritoglu; Kenichi Oishi; Xin Li 007; Ming-Chung Chou; Laurent Younes; Marilyn S. Albert; Constantine Lyketsos; Peter C. M. van Zijl; Michael I. Miller; Susumu Mori (NeuroImage, 2009)

The emerging discipline of Computational Functional Anatomy. - Michael I. Miller; Anqi Qiu (NeuroImage, 2009)

Atlas-based whole brain white matter analysis using large deformation diffeomorphic metric mapping: Application to normal elderly and Alzheimer's disease participants. - Kenichi Oishi; Andreia Faria; Hangyi Jiang; Xin Li 007; Kazi Akhter; Jiangyang Zhang; John T. Hsu; Michael I. Miller; Peter C. M. van Zijl; Marilyn S. Albert; Constantine Lyketsos; Roger P. Woods; et al. (NeuroImage, 2009)

Time sequence diffeomorphic metric mapping and parallel transport track time-dependent shape changes. - Anqi Qiu; Marilyn S. Albert; Laurent Younes; Michael I. Miller (NeuroImage, 2009)

Regional shape abnormalities in mild cognitive impairment and Alzheimer's disease. - Anqi Qiu; Christine Fennema-Notestine; Anders M. Dale; Michael I. Miller (NeuroImage, 2009)

APOE related hippocampal shape alteration in geriatric depression. - Anqi Qiu; Warren D. Taylor; Zheen Zhao; James R. MacFall; Michael I. Miller; Cynthia R. Key; Martha E. Payne; David C. Steffens; K. Ranga R. Krishnan (NeuroImage, 2009)

Neuroanatomical asymmetry patterns in individuals with schizophrenia and their non-psychotic siblings. - Anqi Qiu; Lei Wang 032; Laurent Younes; Michael P. Harms; J. Tilak Ratnanather; Michael I. Miller; John G. Csernansky (NeuroImage, 2009)

Special Issue on Mathematics in Brain Imaging. - Paul M. Thompson; Michael I. Miller; Russell A. Poldrack; Thomas E. Nichols; Jonathan E. Taylor; Keith J. Worsley; J. Tilak Ratnanather (NeuroImage, 2009)

Evolutions equations in computational anatomy. - Laurent Younes; Felipe Arrate; Michael I. Miller (NeuroImage, 2009)

Landmark-referenced voxel-based analysis of diffusion tensor images of the brainstem white matter tracts: Application in patients with middle cerebral artery stroke. - Weihong Zhang; Xin Li 007; Jiangyang Zhang; Andreas R. Luft; Daniel F. Hanley; Peter C. M. van Zijl; Michael I. Miller; Laurent Younes; Susumu Mori (NeuroImage, 2009)

A Bayesian Generative Model for Surface Template Estimation. - Jun Ma; Michael I. Miller; Laurent Younes (Int. J. Biomed. Imaging, 2010)

Atlas-based analysis of neurodevelopment from infancy to adulthood using diffusion tensor imaging and applications for automated abnormality detection. - Andreia Faria; Jiangyang Zhang; Kenichi Oishi; Xin Li 007; Hangyi Jiang; Kazi Akhter; Laurent Hermoye; Seung-Koo Lee; Alexander Hoon; Elaine Stashinko; Michael I. Miller; Peter C. M. van Zijl; et al. (NeuroImage, 2010)

Longitudinal characterization of brain atrophy of a Huntington's disease mouse model by automated morphological analyses of magnetic resonance images. - Jiangyang Zhang; Qi Peng; Qing Li; Neda Jahanshad; Zhipeng Hou; Mali Jiang; Naoki Masuda; Douglas R. Langbehn; Michael I. Miller; Susumu Mori; Christopher A. Ross; Wenzhen Duan (NeuroImage, 2010)

Atlas-guided tract reconstruction for automated and comprehensive examination of the white matter anatomy. - Yajing Zhang; Jiangyang Zhang; Kenichi Oishi; Andreia Faria; Hangyi Jiang; Xin Li 007; Kazi Akhter; Pedro Rosa-Neto; G. Bruce Pike; Alan C. Evans; Arthur W. Toga; Roger P. Woods; et al. (NeuroImage, 2010)

Atlas Generation for Subcortical and Ventricular Structures With Its Applications in Shape Analysis. - Anqi Qiu; Timothy Brown; Bruce Fischl; Jun Ma; Michael I. Miller (IEEE Trans. Image Process., 2010)

Image-based estimation of ventricular fiber orientations for patient-specific simulations. - Fijoy Vadakkumpadan; Hermenegild Arevalo; Can Ceritoglu; Michael I. Miller; Natalia A. Trayanova (EMBC, 2011)

Matching Sparse Sets of Cardiac Image Cross-Sections Using Large Deformation Diffeomorphic Metric Mapping Algorithm. - Siamak Ardekani; Aastha Jain; Saurabh Jain; Theodore P. Abraham; Maria Roselle Abraham; Stefan L. Zimmerman; Raimond L. Winslow; Michael I. Miller; Laurent Younes (STACOM, 2011)

Ontological Labels for Automated Location of Left Ventricular Remodeling. - Shane Steinert-Threlkeld; Siamak Ardekani; José L. V. Mejino Jr.; Landon Detwiler; James F. Brinkley; Michael Halle; Ron Kikinis; Raimond L. Winslow; Michael I. Miller; J. Tilak Ratnanather (ICSC, 2011)

Diffuse Abnormality of Low to Moderately Organized White Matter in Schizophrenia. - Sarah A. J. Reading; Kenichi Oishi; Graham W. Redgrave; Julie McEntee; Megan Shanahan; Nadine Yoritomo; Laurent Younes; Susumu Mori; Michael I. Miller; Peter C. M. van Zijl; Russell L. Margolis; Christopher A. Ross (Brain Connect., 2011)

Quantization and analysis of hippocampal morphometric changes due to dementia of Alzheimer type using metric distances based on large deformation diffeomorphic metric mapping. - Elvan Ceyhan; Mirza Faisal Beg; Can Ceritoglu; Lei Wang 032; John C. Morris; John G. Csernansky; Michael I. Miller; J. Tilak Ratnanather (Comput. Medical Imaging Graph., 2011)

Patient Specific Dosimetry Phantoms Using Multichannel LDDMM of the Whole Body. - Daniel Jacob Tward; Can Ceritoglu; Anthony Kolasny; Gregory M. Sturgeon; William Paul Segars; Michael I. Miller; J. Tilak Ratnanather (Int. J. Biomed. Imaging, 2011)

Statistical Analysis of Cortical Morphometrics Using Pooled Distances Based on Labeled Cortical Distance Maps. - Elvan Ceyhan; M. Hosakere; T. Nishino; J. Alexopoulos; R. D. Todd; Kelly N. Botteron; Michael I. Miller; J. Tilak Ratnanather (J. Math. Imaging Vis., 2011)

An MRI-based atlas and database of the developing mouse brain. - Nelson Chuang; Susumu Mori; Akira Yamamoto; Hangyi Jiang; Xin Ye; Xin Xu; Linda J. Richards; Jeremy Nathans; Michael I. Miller; Arthur W. Toga; Richard L. Sidman; Jiangyang Zhang (NeuroImage, 2011)

Erratum to "Quantitative analysis of brain pathology based on MRI and brain atlases - Applications for cerebral palsy" [NeuroImage 54/3 (2011) 1854-1861]. - Andreia Faria; Alexander Hoon; Elaine Stashinko; Xin Li 007; Hangyi Jiang; Ameneh Mashayekh; Kazi Akhter; John T. Hsu; Kenichi Oishi; Jiangyang Zhang; Michael I. Miller; Peter C. M. van Zijl; et al. (NeuroImage, 2011)

Quantitative analysis of brain pathology based on MRI and brain atlases - Applications for cerebral palsy. - Andreia Faria; Alexander Hoon; Elaine Stashinko; Xin Li 007; Hangyi Jiang; Ameneh Mashayekh; Kazi Akhter; John T. Hsu; Kenichi Oishi; Jiangyang Zhang; Michael I. Miller; Peter C. M. van Zijl; et al. (NeuroImage, 2011)

Multi-contrast human neonatal brain atlas: Application to normal neonate development analysis. - Kenichi Oishi; Susumu Mori; Pamela K. Donohue; Thomas Ernst 001; Lynn Anderson; Steven Buchthal; Andreia Faria; Hangyi Jiang; Xin Li 007; Michael I. Miller; Peter C. M. van Zijl; Linda Chang (NeuroImage, 2011)

Ontological labels for automated location of anatomical shape differences. - Shane Steinert-Threlkeld; Siamak Ardekani; José L. V. Mejino Jr.; Landon Detwiler; James F. Brinkley; Michael Halle; Ron Kikinis; Raimond L. Winslow; Michael I. Miller; J. Tilak Ratnanather (J. Biomed. Informatics, 2012)

Spatiotemporal mapping of brain atrophy in mouse models of Huntington's disease using longitudinal in vivo magnetic resonance imaging. - Manisha Aggarwal; Wenzhen Duan; Zhipeng Hou; Neal Rakesh; Qi Peng; Christopher A. Ross; Michael I. Miller; Susumu Mori; Jiangyang Zhang (NeuroImage, 2012)

Atlas-based analysis of resting-state functional connectivity: Evaluation for reproducibility and multi-modal anatomy-function correlation studies. - Andreia Faria; Suresh Joel; Yajing Zhang; Kenichi Oishi; Peter C. M. van Zijl; Michael I. Miller; James J. Pekar; Susumu Mori (NeuroImage, 2012)

Principal Component Based Diffeomorphic Surface Mapping. - Anqi Qiu; Laurent Younes; Michael I. Miller (IEEE Trans. Medical Imaging, 2012)

Image-Based Estimation of Ventricular Fiber Orientations for Personalized Modeling of Cardiac Electrophysiology. - Fijoy Vadakkumpadan; Hermenegild Arevalo; Can Ceritoglu; Michael I. Miller; Natalia A. Trayanova (IEEE Trans. Medical Imaging, 2012)

Metric Space Structures for Computational Anatomy. - Jianqiao Feng; Xiaoying Tang 001; Minh Tang; Carey E. Priebe; Michael I. Miller (MLMI, 2013)

Cortico-Cortical, Cortico-Striatal, and Cortico-Thalamic White Matter Fiber Tracts Generated in the Macaque Brain via Dynamic Programming. - J. Tilak Ratnanather; Rakesh M. Lal; Michael An; Clare B. Poynton; Muwei Li; Hangyi Jiang; Kenichi Oishi; Lynn D. Selemon; Susumu Mori; Michael I. Miller (Brain Connect., 2013)

High-throughput neuro-imaging informatics. - Michael I. Miller; Andreia V. Faria; Kenichi Oishi; Susumu Mori (Frontiers Neuroinformatics, 2013)

Northwestern University Schizophrenia Data and Software Tool (NUSDAST). - Lei Wang 032; Alexander Kogan; Derin J. Cobia; Kathryn I. Alpert; Anthony Kolasny; Michael I. Miller; Daniel S. Marcus (Frontiers Neuroinformatics, 2013)

Robust Diffeomorphic Mapping via Geodesically Controlled Active Shapes. - Daniel Jacob Tward; Jun Ma; Michael I. Miller; Laurent Younes (Int. J. Biomed. Imaging, 2013)

Estimating dense cardiac 3D motion using sparse 2D tagged MRI cross-sections. - Siamak Ardekani; Geoffrey Gunter; Saurabh Jain; Robert G. Weiss; Michael I. Miller; Laurent Younes (EMBC, 2014)

Improved Reproducibility of Neuroanatomical Definitions through Diffeomorphometry and Complexity Reduction. - Daniel Jacob Tward; Jorge Jovicich; Andrea Soricelli; Giovanni B. Frisoni; Alain Trouvé; Laurent Younes; Michael I. Miller (MLMI, 2014)

Computational Anatomy Gateway: Leveraging XSEDE Computational Resources for Shape Analysis. - Saurabh Jain; Daniel Jacob Tward; David S. Lee; Anthony Kolasny; Timothy Brown; J. Tilak Ratnanather; Michael I. Miller; Laurent Younes (XSEDE, 2014)

Tools for multiple granularity analysis of brain MRI data for individualized image analysis. - Aigerim Djamanakova; Xiaoying Tang 001; Xin Li 007; Andreia V. Faria; Can Ceritoglu; Kenichi Oishi; Argye E. Hillis; Marilyn S. Albert; Constantine Lyketsos; Michael I. Miller; Susumu Mori (NeuroImage, 2014)

Knowledge-based automated reconstruction of human brain white matter tracts using a path-finding approach with dynamic programming. - Muwei Li; J. Tilak Ratnanather; Michael I. Miller; Susumu Mori (NeuroImage, 2014)

A Bayesian approach to the creation of a study-customized neonatal brain atlas. - Yajing Zhang; Linda Chang; Can Ceritoglu; Jon Skranes; Thomas Ernst 001; Susumu Mori; Michael I. Miller; Kenichi Oishi (NeuroImage, 2014)

Evaluation of group-specific, whole-brain atlas generation using Volume-based Template Estimation (VTE): Application to normal and Alzheimer's populations. - Yajing Zhang; Jiangyang Zhang; Johnny T. C. Hsu; Kenichi Oishi; Andreia Faria; Marilyn S. Albert; Michael I. Miller; Susumu Mori (NeuroImage, 2014)

A fast atlas pre-selection procedure for multi-atlas based brain segmentation. - Jingbo Ma; Heather T. Ma; Hengtong Li 001; Chenfei Ye; Dan Wu; Xiaoying Tang 001; Michael I. Miller; Susumu Mori (EMBC, 2015)

Simultaneous skull-stripping and lateral ventricle segmentation via fast multi-atlas likelihood fusion. - Xiaoying Tang 001; Kwame S. Kutten; Can Ceritoglu; Susumu Mori; Michael I. Miller (Image Processing, 2015)

Change Point Estimation of the Hippocampal Volumes in Alzheimer's Disease. - Xiaoying Tang 001; Marilyn S. Albert; Michael I. Miller; Laurent Younes (CRV, 2016)

An image registration pipeline for analysis of transsynaptic tracing in mice. - Kwame S. Kutten; Stephen M. Eacker; Valina L. Dawson; Ted M. Dawson; J. Tilak Ratnanather; Michael I. Miller (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2016)

Reducing Variability in Anatomical Definitions Over Time Using Longitudinal Diffeomorphic Mapping. - Daniel Jacob Tward; Chelsea S. Sicat; Timothy Brown; Arnold Bakker; Michael I. Miller (SeSAMI@MICCAI, 2016)

Tools for studying populations and timeseries of neuroanatomy enabled through GPU acceleration in the Computational Anatomy Gateway. - Daniel Jacob Tward; Anthony Kolasny; Chelsea S. Sicat; Timothy Brown; Michael I. Miller (XSEDE, 2016)

A Diffeomorphic Approach to Multimodal Registration with Mutual Information: Applications to CLARITY Mouse Brain Images. - Kwame S. Kutten; Nicolas Charon; Michael I. Miller; J. Tilak Ratnanather; Karl Deisseroth; Li Ye; Joshua T. Vogelstein (CoRR, 2016)

Deformably Registering and Annotating Whole CLARITY Brains to an Atlas via Masked LDDMM. - Kwame S. Kutten; Joshua T. Vogelstein; Nicolas Charon; Li Ye; Karl Deisseroth; Michael I. Miller (CoRR, 2016)

MRICloud: Delivering High-Throughput MRI Neuroinformatics as Cloud-Based Software as a Service. - Susumu Mori; Dan Wu; Can Ceritoglu; Yue Li; Anthony Kolasny; Marc Vaillant; Andreia V. Faria; Kenichi Oishi; Michael I. Miller (Comput. Sci. Eng., 2016)

Shape analysis of hypertrophic and hypertensive heart disease using MRI-based 3D surface models of left ventricular geometry. - Siamak Ardekani; Saurabh Jain; Alianna Sanzi; Celia P. Corona-Villalobos; Theodore P. Abraham; M. Roselle Abraham; Stefan L. Zimmerman; Katherine C. Wu; Raimond L. Winslow; Michael I. Miller; Laurent Younes (Medical Image Anal., 2016)

Resource atlases for multi-atlas brain segmentations with multiple ontology levels based on T1-weighted MRI. - Dan Wu; Ting Ma 001; Can Ceritoglu; Yue Li; Jill Chotiyanonta; Zhipeng Hou; John T. Hsu; Xin Xu; Timothy Brown; Michael I. Miller; Susumu Mori (NeuroImage, 2016)

Diffeomorphic Surface Registration with Atrophy Constraints. - Sylvain Arguillère; Michael I. Miller; Laurent Younes (SIAM J. Imaging Sci., 2016)

A Large Deformation Diffeomorphic Approach to Registration of CLARITY Images via Mutual Information. - Kwame S. Kutten; Nicolas Charon; Michael I. Miller; J. Tilak Ratnanather; Jordan Matelsky; Alexander D. Baden; Kunal Lillaney; Karl Deisseroth; Li Ye; Joshua T. Vogelstein (MICCAI (1), 2017)

Unbiased Diffeomorphic Mapping of Longitudinal Data with Simultaneous Subject Specific Template Estimation. - Daniel Tward; Michael I. Miller (GRAIL/MFCA/MICGen@MICCAI, 2017)

Performance of Image Matching in the Computational Anatomy Gateway: CPU and GPU Implementations in OpenCL. - Daniel Jacob Tward; Brian C. Lee; Partha P. Mitra; Michael I. Miller (PEARC, 2017)

Parametric Surface Diffeomorphometry for Low Dimensional Embeddings of Dense Segmentations and Imagery. - Daniel Jacob Tward; Michael I. Miller; Alain Trouvé; Laurent Younes (IEEE Trans. Pattern Anal. Mach. Intell., 2017)

Changepoint analysis of putamen and thalamus subregions in premanifest huntington's disease. - Xiaoqing Tan; Christopher A. Ross; Michael I. Miller; Xiaoying Tang 001 (ISBI, 2018)

On variational solutions for whole brain serial-section histology using a Sobolev prior in the computational anatomy random orbit model. - Brian C. Lee; Daniel Jacob Tward; Partha P. Mitra; Michael I. Miller (PLoS Comput. Biol., 2018)

Characterizing the human hippocampus in aging and Alzheimer's disease using a computational atlas derived from ex vivo MRI and histology. - Daniel H. Adler; Laura E. M. Wisse; Ranjit Ittyerah; John Pluta; Song-Lin Ding; Long Xie; Jiancong Wang; Salmon Kadivar; John L. Robinson; Theresa Schuck; John Q. Trojanowski; Murray Grossman; et al. (Proc. Natl. Acad. Sci. USA, 2018)

Diffeomorphic Upsampling of Serially Acquired Sparse 2D Cross-Sections in Cardiac MRI. - Brian C. Lee; Daniel Jacob Tward; Jinchi Wei; Dnyanesh Tipre; Robert G. Weiss; Michael I. Miller; Siamak Ardekani (EMBC, 2019)

A Model for Elastic Evolution on Foliated Shapes. - Dai-Ni Hsieh; Sylvain Arguillère; Nicolas Charon; Michael I. Miller; Laurent Younes (IPMI, 2019)

3D Mapping of Serial Histology Sections with Anomalies Using a Novel Robust Deformable Registration Algorithm. - Daniel Tward; Xu Li 003; Bing-Xing Huo; Brian C. Lee; Partha P. Mitra; Michael I. Miller (MBIA/MFCA@MICCAI, 2019)

Expanding the Computational Anatomy Gateway from clinical imaging to basic neuroscience research. - Daniel Tward; Anthony Kolasny; Fatima Khan; Juan Troncoso; Michael I. Miller (PEARC, 2019)

Multi-atlas tool for automated segmentation of brain gray matter nuclei and quantification of their magnetic susceptibility. - Xu Li 003; Lin Chen 038; Kwame S. Kutten; Can Ceritoglu; Yue Li; Ningdong Kang; John T. Hsu; Ye Qiao; Hongjiang Wei; Chunlei Liu 004; Michael I. Miller; Susumu Mori; et al. (NeuroImage, 2019)

Infinitesimal Drift Diffeomorphometry Models for Population Shape Analysis. - Brian C. Lee; Daniel Jacob Tward; Zhiyi Hu; Alain Trouvé; Michael I. Miller (CVPR Workshops, 2020)

Coarse-to-Fine Hamiltonian Dynamics of Hierarchical Flows in Computational Anatomy. - Michael I. Miller; Daniel Jacob Tward; Alain Trouvé (CVPR Workshops, 2020)

Multi Scale Diffeomorphic Metric Mapping of Spatial Transcriptomics Datasets. - Michael I. Miller; Jean Fan; Daniel Jacob Tward (CVPR Workshops, 2021)

From Picoscale Pathology to Decascale Disease: Image Registration with a Scattering Transform and Varifolds for Manipulating Multiscale Data. - Kaitlin M. Stouffer; Zhenzhen Wang; Eileen Xu; Karl Lee; Paige Lee; Michael I. Miller; Daniel Jacob Tward (ML-CDS@MICCAI, 2021)

Hidden Markov Modeling for Maximum Likelihood Neuron Reconstruction. - Thomas L. Athey; Daniel Tward; Ulrich Mueller; Michael I. Miller (CoRR, 2021)

Fitting Splines to Axonal Arbors Quantifies Relationship Between Branch Order and Geometry. - Thomas L. Athey; Jacopo Teneggi; Joshua T. Vogelstein; Daniel Jacob Tward; Ulrich Mueller; Michael I. Miller (Frontiers Neuroinformatics, 2021)

Corrigendum to "Robust Diffeomorphic Mapping via Geodesically Controlled Active Shapes". - Daniel Jacob Tward; Jun Ma; Michael I. Miller; Laurent Younes (Int. J. Biomed. Imaging, 2021)

Prospective Learning: Back to the Future. - Joshua T. Vogelstein; Timothy D. Verstynen; Konrad P. Kording; Leyla Isik; John W. Krakauer; Ralph Etienne-Cummings; Elizabeth L. Ogburn; Carey E. Priebe; Randal C. Burns; Kwame S. Kutten; James J. Knierim; James B. Potash; et al. (CoRR, 2022)

Image Varifolds on Meshes for Mapping Spatial Transcriptomics. - Michael I. Miller; Alain Trouvé; Laurent Younes (CoRR, 2022)

Prospective Learning: Principled Extrapolation to the Future. - Ashwin De Silva; Rahul Ramesh; Lyle H. Ungar; Marshall G. Hussain Shuler; Noah J. Cowan; Michael L. Platt; Chen Li; Leyla Isik; Seung-Eon Roh; Adam S. Charles; Archana Venkataraman; Brian Caffo; et al. (CoLLAs, 2023)

BrainLine: An Open Pipeline for Connectivity Analysis of Heterogeneous Whole-Brain Fluorescence Volumes. - Thomas L. Athey; Matthew A. Wright; Marija Pavlovic; Vikram Chandrashekhar; Karl Deisseroth; Michael I. Miller; Joshua T. Vogelstein (Neuroinformatics, 2023)

Space-feature measures on meshes for mapping spatial transcriptomics. - Michael I. Miller; Alain Trouvé; Laurent Younes (Medical Image Anal., 2024)

Preserving Derivative Information while Transforming Neuronal Curves. - Thomas L. Athey; Daniel Jacob Tward; Ulrich Mueller; Laurent Younes; Joshua T. Vogelstein; Michael I. Miller (Neuroinformatics, 2024)