A genotype calling algorithm for the Illumina BeadArray platform. - Yik Y. Teo; Michael Inouye; Kerrin S. Small; Rhian Gwilliam; Panagiotis Deloukas; Dominic Kwiatkowski; Taane G. Clark (Bioinform., 2007)

Design of multiple sequence alignment algorithms on parallel, distributed memory supercomputers. - Philip C. Church; Andrzej Goscinski; Kathryn E. Holt; Michael Inouye; Amol Ghoting; Konstantin Makarychev; Matthias Reumann (EMBC, 2011)

Replication of epistatic DNA loci in two case-control GWAS studies using OPE algorithm. - Benjamin Goudey; Qiao Wang; Dave Rawlinson 001; Armita Zarnegar; Eder Kikianty; John Markham; Geoff MacIntyre; Gad Abraham; Linda Stern; Michael Inouye; Izhak Haviv; Adam Kowalczyk (BMC Bioinform., 2011)

Supercomputing enabling exhaustive statistical analysis of genome wide association study data: Preliminary results. - Matthias Reumann; Enes Makalic; Benjamin W. Goudey; Michael Inouye; Adrian Bickerstaffe; Minh Bui; Daniel J. Park; Miroslaw K. Kapuscinski; Daniel F. Schmidt; Zeyu Zhou; Guoqi Q. Qian; Justin Zobel; et al. (EMBC, 2012)

SparSNP: Fast and memory-efficient analysis of all SNPs for phenotype prediction. - Gad Abraham; Adam Kowalczyk; Justin Zobel; Michael Inouye (BMC Bioinform., 2012)

High performance computing enabling exhaustive analysis of higher order single nucleotide polymorphism interaction in Genome Wide Association Studies. - Benjamin Goudey; Mani Abedini; John L. Hopper; Michael Inouye; Enes Makalic; Daniel F. Schmidt; John Wagner; Zeyu Zhou; Justin Zobel; Matthias Reumann (Health Inf. Sci. Syst., 2015)

FlashPCA2: principal component analysis of Biobank-scale genotype datasets. - Gad Abraham; Yixuan Qiu; Michael Inouye (Bioinform., 2017)

FastSpar: rapid and scalable correlation estimation for compositional data. - Stephen C. Watts; Scott C. Ritchie; Michael Inouye; Kathryn E. Holt (Bioinform., 2019)

FPGA Based Emulation Environment for Neuromorphic Architectures. - Spencer Valancius; Edward Richter; Ruben Purdy; Kris Rockowitz; Michael Inouye; Joshua Mack; Nirmal Kumbhare; Kaitlin Lindsay Fair; John Mixter; Ali Akoglu (IPDPS Workshops, 2020)

Green Algorithms: Quantifying the carbon emissions of computation. - Loïc Lannelongue; Jason Grealey; Michael Inouye (CoRR, 2020)

Ten simple rules to make your computing more environmentally sustainable. - Loïc Lannelongue; Jason Grealey; Alex Bateman; Michael Inouye (PLoS Comput. Biol., 2021)

RANC: Reconfigurable Architecture for Neuromorphic Computing. - Joshua Mack; Ruben Purdy; Kris Rockowitz; Michael Inouye; Edward Richter; Spencer Valancius; Nirmal Kumbhare; Md Sahil Hassan; Kaitlin Lindsay Fair; John Mixter; Ali Akoglu (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2021)

Known allosteric proteins have central roles in genetic disease. - György Abrusán; David B. Ascher; Michael Inouye (PLoS Comput. Biol., 2022)

GREENER principles for environmentally sustainable computational science. - Loïc Lannelongue; Hans-Erik G. Aronson; Alex Bateman; Ewan Birney; Talia Caplan; Martin Juckes; Johanna R. McEntyre; Andrew D. Morris; Gerry Reilly; Michael Inouye (Nat. Comput. Sci., 2023)

The NHGRI-EBI GWAS Catalog: knowledgebase and deposition resource. - Elliot Sollis; Abayomi Mosaku; Ala Abid; Annalisa Buniello; Maria Cerezo; Laurent Gil; Tudor Groza; Osman Nuri Günes; Peggy Hall; James D. Hayhurst; Arwa Ibrahim; Yue Ji; et al. (Nucleic Acids Res., 2023)

GPU-RANC: A CUDA Accelerated Simulation Framework for Neuromorphic Architectures. - Md Sahil Hassan; Michael Inouye; Miguel Castro-Gonzalez; Ilkin Aliyev; Joshua Mack; Maisha Hafiz; Ali Akoglu (NICE, 2024)

Pitfalls of machine learning models for protein-protein interaction networks. - Loïc Lannelongue; Michael Inouye (Bioinform., 2024)