TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities. - Shengyin Gu; Iain Anderson; Victor Kunin; Michael J. Cipriano; Simon Minovitsky; Gunther H. Weber; Nina Amenta; Bernd Hamann; Inna Dubchak (Bioinform., 2007)

RegTransBase - a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. - Alexei E. Kazakov; Michael J. Cipriano; Pavel S. Novichkov; Simon Minovitsky; Dmitry V. Vinogradov; Adam P. Arkin; Andrey A. Mironov; Mikhail S. Gelfand; Inna Dubchak (Nucleic Acids Res., 2007)