SA-SSR: a suffix array-based algorithm for exhaustive and efficient SSR discovery in large genetic sequences. - Brandon D. Pickett; S. M. Karlinsey; C. E. Penrod; Michael J. Cormier; Mark T. W. Ebbert; Dennis K. Shiozawa; C. J. Whipple; Perry G. Ridge (Bioinform., 2016)

Combining genetic constraint with predictions of alternative splicing to prioritize deleterious splicing in rare disease studies. - Michael J. Cormier; Brent S. Pedersen; Pinar Bayrak-Toydemir; Aaron R. Quinlan (BMC Bioinform., 2022)

Annotation of structural variants with reported allele frequencies and related metrics from multiple datasets using SVAFotate. - Thomas J. Nicholas; Michael J. Cormier; Aaron R. Quinlan (BMC Bioinform., 2022)