BART: a transcription factor prediction tool with query gene sets or epigenomic profiles. - Zhenjia Wang; Mete Civelek; Clint L. Miller; Nathan C. Sheffield; Michael J. Guertin; Chongzhi Zang (Bioinform., 2018)

Defining data-driven primary transcript annotations with primaryTranscriptAnnotation in R. - Warren D. Anderson; Fabiana M. Duarte; Mete Civelek; Michael J. Guertin (Bioinform., 2020)