Accurate Prediction of Protein Disordered Regions by Mining Protein Structure Data. - Jianlin Cheng; Michael J. Sweredoski; Pierre Baldi (Data Min. Knowl. Discov., 2005)

SCRATCH: a protein structure and structural feature prediction server. - Jianlin Cheng; Arlo Z. Randall; Michael J. Sweredoski; Pierre Baldi (Nucleic Acids Res., 2005)

DOMpro: Protein Domain Prediction Using Profiles, Secondary Structure, Relative Solvent Accessibility, and Recursive Neural Networks. - Jianlin Cheng; Michael J. Sweredoski; Pierre Baldi (Data Min. Knowl. Discov., 2006)

Minimizing the overlap problem in protein NMR: a computational framework for precision amino acid labeling. - Michael J. Sweredoski; Kevin J. Donovan; Bao D. Nguyen; A. J. Shaka; Pierre Baldi (Bioinform., 2007)

TMBpro: secondary structure, beta-contact and tertiary structure prediction of transmembrane beta-barrel proteins. - Arlo Z. Randall; Jianlin Cheng; Michael J. Sweredoski; Pierre Baldi (Bioinform., 2008)

PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure. - Michael J. Sweredoski; Pierre Baldi (Bioinform., 2008)