The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes. - Matthew N. McCall; Karan Uppal; Harris A. Jaffee; Michael J. Zilliox; Rafael A. Irizarry (Nucleic Acids Res., 2011)

ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data. - George Wu; Jason T. Yustein; Matthew N. McCall; Michael J. Zilliox; Rafael A. Irizarry; Karen Zeller; Chi V. Dang; Hongkai Ji (Bioinform., 2013)

The Gene Expression Barcode 3.0: improved data processing and mining tools. - Matthew N. McCall; Harris A. Jaffee; Susan J. Zelisko; Neeraj Sinha; Guido J. E. K. Hooiveld; Rafael A. Irizarry; Michael J. Zilliox (Nucleic Acids Res., 2014)