HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data. - Huihuang Yan; Jared Evans; Mike Kalmbach; Raymond M. Moore; Sumit Middha; Stanislav Luban; Liguo Wang 002; Aditya Bhagwate; Ying Li; Zhifu Sun; Xianfeng Chen; Jean-Pierre A. Kocher (BMC Bioinform., 2014)

Impact of post-alignment processing in variant discovery from whole exome data. - Shulan Tian; Huihuang Yan; Michael Kalmbach; Susan L. Slager (BMC Bioinform., 2016)

CircularLogo: A lightweight web application to visualize intra-motif dependencies. - Zhenqing Ye; Tao Ma; Michael Kalmbach; Surendra Dasari; Jean-Pierre A. Kocher; Liguo Wang 002 (BMC Bioinform., 2017)

Comparative analysis of de novo assemblers for variation discovery in personal genomes. - Shulan Tian; Huihuang Yan; Eric W. Klee; Michael Kalmbach; Susan L. Slager (Briefings Bioinform., 2018)

Recommendations for performance optimizations when using GATK3.8 and GATK4. - Jacob R Heldenbrand; Saurabh Baheti; Matthew A. Bockol; Travis M. Drucker; Steven N. Hart; Matthew E. Hudson; Ravishankar K. Iyer; Michael Kalmbach; Katherine Irene Kendig; Eric W. Klee; Nathan R Mattson; Eric D. Wieben; et al. (BMC Bioinform., 2019)

Correction to: Recommendations for performance optimizations when using GATK3.8 and GATK4. - Jacob R Heldenbrand; Saurabh Baheti; Matthew A. Bockol; Travis M. Drucker; Steven N. Hart; Matthew E. Hudson; Ravishankar K. Iyer; Michael Kalmbach; Katherine Irene Kendig; Eric W. Klee; Nathan R Mattson; Eric D. Wieben; et al. (BMC Bioinform., 2019)