Visualization of signal transduction processes in the crowded environment of the cell. - Martin Falk; Michael Klann; Matthias Reuss; Thomas Ertl (PacificVis, 2009)

3D visualization of concentrations from stochastic agent-based signal transduction simulations. - Martin Falk; Michael Klann; Matthias Reuss; Thomas Ertl (ISBI, 2010)

Parallelized agent-based simulation on CPU and graphics hardware for spatial and stochastic models in biology. - Martin Falk; Michael Ott 002; Thomas Ertl; Michael Klann; Heinz Koeppl (CMSB, 2011)

Agent-based simulation of reactions in the crowded and structured intracellular environment: Influence of mobility and location of the reactants. - Michael Klann; Alexei Lapin; Matthias Reuss (BMC Syst. Biol., 2011)

Hybrid spatial Gillespie and particle tracking simulation. - Michael Klann; Arnab Ganguly 001; Heinz Koeppl (Bioinform., 2012)

From Microscopy Data to in silico Environments for in vivo Oriented Simulations. - Noriko Hiroi; Michael Klann; Keisuke Iba; Pablo de Heras Ciechomski; Shuji Yamashita; Akito Tabira; Takahiro Okuhara; Takeshi Kubojima; Yasunori Okada; Kotaro Oka; Robin Mange; Michael Unger; et al. (EURASIP J. Bioinform. Syst. Biol., 2012)

From biochemical reaction networks to 3D dynamics in the cell: The ZigCell3D modeling, simulation and visualisation framework. - Pablo de Heras Ciechomski; Michael Klann; Robin Mange; Heinz Koeppl (BioVis, 2013)

Coarse-Grained Brownian Dynamics Simulation of Rule-Based Models. - Michael Klann; Loïc Paulevé; Tatjana Petrov; Heinz Koeppl (CMSB, 2013)